RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA788929" and tax_clade = "Haptista"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA788929 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3321018 3321018 PRJNA788929_P_NODE_9123_length_602_cov_26.476371_g8472_i0 PRJNA788929 9123 602 26.476371 159.38775342 Prymnesium parvum 97485 Haptophyta other_Eukaryota 169 2.85e-50   NR KAL1522762.1 97485 g8472 i0 71.1 2.51661129568106 114 32 56.8 1 144 485 12 124 KAL1522762.1 hypothetical protein AB1Y20_017734 [Prymnesium parvum] diamond 1515 169 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
20340818 20340818 PRJNA788929_P_NODE_8156_length_648_cov_20.624348_g7509_i0 PRJNA788929 8156 648 20.624348 133.64577504 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 156 2.37e-44   NR KAG8468267.1 2081491 g7509 i0 60.3 1.81481481481481 131 52 60.6 0 511 119 1 131 KAG8468267.1 hypothetical protein KFE25_013350 [Diacronema lutheri] diamond 1176 156 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;