RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA784979" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA784979 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26904813 26904813 PRJNA784979_S_NODE_7501_length_186_cov_1.386861_g7459_i0 PRJNA784979 7501 186 1.386861 2.57956146 Viruses 10239 Viruses Viruses 115 4.2e-28   NR UJQ92917.1 2583949 g7459 i0 91.7 3.87096774193548 60 5 96.8 0 181 2 740 799 UJQ92917.1 MAG: putative RNA-dependent RNA polymerase [Narnaviridae sp.] diamond 720 115 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Narnaviridae sp.
28894447 28894447 PRJNA784979_S_NODE_4168_length_230_cov_1.491713_g4126_i0 PRJNA784979 4168 230 1.491713 3.4309399 Viruses 10239 Viruses Viruses 135 2.08e-35   NR URG14887.1 1530251 g4126 i0 90.3 3.75652173913043 72 7 93.9 0 223 8 222 293 URG14887.1 MAG: RNA dependent RNA polymerase, partial [Picornaviridae sp.] diamond 864 135 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.
29588860 29588860 PRJNA784979_S_NODE_3670_length_243_cov_1.407216_g3628_i0 PRJNA784979 3670 243 1.407216 3.41953488 Viruses 10239 Viruses Viruses 129 1.2199999999999999e-32   NR URG14941.1 1530251 g3628 i0 77.2 1.95061728395062 79 18 97.5 0 241 5 45 123 URG14941.1 MAG: RNA dependent RNA polymerase, partial [Picornaviridae sp.] diamond 474 129 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;