RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA784979" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 4 ✖

bioproject 1

  • PRJNA784979 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28569494 28569494 PRJNA784979_S_NODE_13507_length_161_cov_0.901786_g13465_i0 PRJNA784979 13507 161 0.901786 1.45187546 Acer saccharum 4024 Plants Plants 81.6 6.57e-17   NR KAK0603915.1 4024 g13465 i0 75 0.968944099378882 52 13 96.9 0 4 159 32 83 KAK0603915.1 hypothetical protein LWI29_010072 [Acer saccharum] diamond 156 81.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Sapindaceae Acer Acer saccharum
30811898 30811898 PRJNA784979_S_NODE_13294_length_161_cov_0.910714_g13252_i0 PRJNA784979 13294 161 0.910714 1.46624954 Lolium multiflorum 4521 Plants Plants 92.4 3.01e-21   NR KAK1660610.1 4521 g13252 i0 85.7 43.8260869565217 49 7 91.3 0 14 160 29 77 KAK1660610.1 hypothetical protein QYE76_048769 [Lolium multiflorum] diamond 7056 92.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium multiflorum
31950118 31950118 PRJNA784979_S_NODE_7597_length_185_cov_1.602941_g7555_i0 PRJNA784979 7597 185 1.602941 2.96544085 Morus notabilis 981085 Plants Plants 78.6 2.35e-16   NR EXC14993.1 981085 g7555 i0 94.9 17.7081081081081 39 2 63.2 0 185 69 94 132 EXC14993.1 hypothetical protein L484_008147 [Morus notabilis] diamond 3276 78.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Moraceae Morus Morus notabilis
32212713 32212713 PRJNA784979_S_NODE_12278_length_163_cov_0.894737_g12236_i0 PRJNA784979 12278 163 0.894737 1.45842131 root 1 Root_unresolved Root_unresolved 57.8 6.34e-8   NR CAM6053282.1 128247 g12236 i0 48.9 2.42944785276074 45 23 82.8 0 11 145 1073 1117 CAM6053282.1 unnamed protein product [Sphagnum tenellum] diamond 396 57.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum tenellum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;