RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA784298" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA784298 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13519192 13519192 PRJNA784298_P_NODE_26851_length_241_cov_0.916667_g26650_i0 PRJNA784298 26851 241 0.916667 2.20916747 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 147 3.46e-39   NR XP_001031773.1 312017 g26650 i0 93.7 0.983402489626556 79 5 98.3 0 239 3 203 281 XP_001031773.1 methylthioribose kinase [Tetrahymena thermophila SB210] diamond 237 147 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
28957918 28957918 PRJNA784298_P_NODE_23748_length_251_cov_0.865169_g23547_i0 PRJNA784298 23748 251 0.865169 2.17157419 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 92.8 2.31e-20   NR KAL4436246.1 5901 g23547 i0 72.7 1.97211155378486 55 14 64.5 1 188 27 1 55 KAL4436246.1 hypothetical protein ABPG74_015837 [Tetrahymena malaccensis] diamond 495 92.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
30622222 30622222 PRJNA784298_P_NODE_27613_length_232_cov_2.421384_g27412_i0 PRJNA784298 27613 232 2.421384 5.61761088 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 114 2.37e-28   NR XP_001015806.1 312017 g27412 i0 73.3 0.969827586206897 75 20 97 0 7 231 1 75 XP_001015806.1 papain family cysteine protease [Tetrahymena thermophila SB210] diamond 225 114 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31033382 31033382 PRJNA784298_P_NODE_25595_length_245_cov_0.895349_g25394_i0 PRJNA784298 25595 245 0.895349 2.19360505 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 122 8.06e-33   NR XP_001030006.1 312017 g25394 i0 92.2 0.783673469387755 64 5 78.4 0 194 3 62 125 XP_001030006.1 ornithine decarboxylase antizyme protein [Tetrahymena thermophila SB210] diamond 192 122 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;