RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA782551" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA782551 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27085272 27085272 PRJNA782551_P_NODE_21702_length_244_cov_0.900585_g21580_i0 PRJNA782551 21702 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 74.3 4.71e-14   NR XP_004336316.1 1257118 g21580 i0 50.7 0.922131147540984 75 35 89.8 1 223 5 3 77 XP_004336316.1 proteasome 26S subunit, putative [Acanthamoeba castellanii str. Neff] diamond 225 74.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28253710 28253710 PRJNA782551_P_NODE_24726_length_241_cov_0.916667_g24604_i0 PRJNA782551 24726 241 0.916667 2.20916747 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 89.4 1.19e-19   NR PRP86653.1 1890364 g24604 i0 50.6 4.91701244813278 79 39 98.3 0 239 3 83 161 PRP86653.1 ras-related protein Rab-11B-like isoform 2 [Planoprotostelium fungivorum] diamond 1185 89.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32519963 32519963 PRJNA782551_P_NODE_13779_length_265_cov_1.098958_g13657_i0 PRJNA782551 13779 265 1.098958 2.9122387 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 114 4.89e-28   NR PRP80443.1 1890364 g13657 i0 55.7 3.9622641509434 88 39 99.6 0 264 1 261 348 PRP80443.1 hypothetical protein PROFUN_11898 [Planoprotostelium fungivorum] diamond 1050 114 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;