RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA782235" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA782235 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28294585 28294585 PRJNA782235_P_NODE_12186_length_275_cov_1.524752_g11997_i0 PRJNA782235 12186 275 1.524752 4.193068 Parachlamydiales 1963360 Bacteria Bacteria 138 1.58e-35   NR WP_075882831.1 1785087 g11997 i0 71.7 7.78909090909091 92 25 99.3 1 3 275 697 788 WP_075882831.1 DNA topoisomerase (ATP-hydrolyzing) subunit A [Candidatus Protochlamydia sp. W-9] diamond 2142 138 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp. W-9
29241887 29241887 PRJNA782235_P_NODE_22849_length_246_cov_0.890173_g22660_i0 PRJNA782235 22849 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 136 3.4799999999999995e-35   NR HNA62028.1 2047756 g22660 i0 77.8 7.90243902439024 81 18 98.8 0 245 3 125 205 HNA62028.1 transketolase [Rhabdochlamydiaceae bacterium] diamond 1944 137 0.992700729927007 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;