RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA782235" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA782235 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10967608 10967608 PRJNA782235_P_NODE_5069_length_388_cov_1.428571_g4880_i0 PRJNA782235 5069 388 1.428571 5.54285548 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 187 1.18e-58   NR WP_047395296.1 1339239 g4880 i0 93.3 0.920103092783505 119 8 92 0 10 366 1 119 WP_047395296.1 hypothetical protein [Cetobacterium sp. ZOR0034] diamond 357 187 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
29642690 29642690 PRJNA782235_P_NODE_8290_length_314_cov_1.278008_g8101_i0 PRJNA782235 8290 314 1.278008 4.01294512 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 201 2.13e-62   NR WP_047384903.1 1340502 g8101 i0 99 0.993630573248408 104 1 99.4 0 3 314 14 117 WP_047384903.1 hypothetical protein [Cetobacterium sp. ZWU0022] diamond 312 201 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
30590640 30590640 PRJNA782235_P_NODE_4313_length_424_cov_1.310541_g4124_i0 PRJNA782235 4313 424 1.310541 5.55669384 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 266 1.0299999999999996e-87   NR WP_047384900.1 1340502 g4124 i0 100 0.990566037735849 140 0 99.1 0 422 3 106 245 WP_047384900.1 hypothetical protein [Cetobacterium sp. ZWU0022] diamond 420 266 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
30811851 30811851 PRJNA782235_P_NODE_26794_length_242_cov_0.911243_g26605_i0 PRJNA782235 26794 242 0.911243 2.20520806 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 144 5.75e-39   NR WP_021768044.1 712359 g26605 i0 95 1.98347107438017 80 4 99.2 0 1 240 17 96 WP_021768044.1 ComEC/Rec2 family competence protein [Leptotrichia sp. oral taxon 215] diamond 480 144 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215
31539090 31539090 PRJNA782235_P_NODE_17936_length_250_cov_0.870056_g17747_i0 PRJNA782235 17936 250 0.870056 2.17514 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 107 2.6e-28   NR WP_297432496.1 527638 g17747 i0 88.7 0.744 62 7 74.4 0 2 187 38 99 WP_297432496.1 phosphopantothenoylcysteine decarboxylase, partial [uncultured Cetobacterium sp.] diamond 186 107 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
32013447 32013447 PRJNA782235_P_NODE_24318_length_244_cov_0.900585_g24129_i0 PRJNA782235 24318 244 0.900585 2.1974274 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 155 7.269999999999999e-45   NR WP_294094644.1 527638 g24129 i0 98.8 0.995901639344262 81 1 99.6 0 244 2 204 284 WP_294094644.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [uncultured Cetobacterium sp.] diamond 243 155 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;