RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA781453" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA781453 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28632872 28632872 PRJNA781453_P_NODE_33667_length_249_cov_0.875000_g33552_i0 PRJNA781453 33667 249 0.875 2.17875 Garrulus glandarius parvoviridae sp. 2794508 Viruses Viruses 45.8 0.00304   NR QTE03959.1 2794508 g33552 i0 50 1.1566265060241 36 18 43.4 0 138 245 149 184 QTE03959.1 MAG: nonstructural protein 1, partial [Garrulus glandarius parvoviridae sp.] diamond 288 45.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Garrulus glandarius parvoviridae sp.
29421801 29421801 PRJNA781453_P_NODE_20329_length_324_cov_1.227092_g20214_i0 PRJNA781453 20329 324 1.227092 3.97577808 Betapolyomavirus macacae 1891767 Viruses Viruses 53.5 1.55e-5   NR AAK29054.1 1891767 g20214 i0 78.1 0.296296296296296 32 7 29.6 0 129 34 506 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 96 53.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;