RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA781427" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA781427 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2487499 2487499 PRJNA781427_P_NODE_75502_length_251_cov_0.865169_g74618_i0 PRJNA781427 75502 251 0.865169 2.17157419 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 132 2.7799999999999997e-37   NR MDV3194623.1 2754999 g74618 i0 89.9 18.9203187250996 69 7 82.5 0 208 2 47 115 MDV3194623.1 reverse transcriptase family protein [Candidatus Phytoplasma australasiaticum] diamond 4749 132 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
29011852 29011852 PRJNA781427_P_NODE_74428_length_251_cov_0.865169_g73544_i0 PRJNA781427 74428 251 0.865169 2.17157419 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 124 5.42e-34   NR MDV3194640.1 2754999 g73544 i0 90.5 0.752988047808765 63 6 75.3 0 63 251 70 132 MDV3194640.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 189 124 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
30062789 30062789 PRJNA781427_P_NODE_86091_length_246_cov_0.890173_g85207_i0 PRJNA781427 86091 246 0.890173 2.18982558 Candidatus Izemoplasma 2975549 Bacteria Bacteria 84.7 2.06e-17   NR AIO19034.1 1541959 g85207 i0 72.2 3.23170731707317 54 15 65.9 0 245 84 249 302 AIO19034.1 Pseudouridine-5'-phosphate glycosidase [Candidatus Izimaplasma bacterium HR1] diamond 795 84.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. HR1
31760316 31760316 PRJNA781427_P_NODE_94537_length_242_cov_0.911243_g93653_i0 PRJNA781427 94537 242 0.911243 2.20520806 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 92 4.09e-21   NR MDV3194616.1 2754999 g93653 i0 67.2 0.793388429752066 64 21 79.3 0 51 242 35 98 MDV3194616.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 192 92 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;