RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA781427" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA781427 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29390545 29390545 PRJNA781427_P_NODE_82029_length_248_cov_0.880000_g81145_i0 PRJNA781427 82029 248 0.88 2.1824 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 45.1 0.00541   NR KAH8613351.1 5699 g81145 i0 43.4 0.641129032258065 53 30 64.1 0 244 86 49 101 KAH8613351.1 hypothetical protein ERJ75_000798000 [Trypanosoma vivax] diamond 159 45.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
31380935 31380935 PRJNA781427_P_NODE_41676_length_353_cov_1.100000_g40794_i0 PRJNA781427 41676 353 1.1 3.883 Herpetomonas muscarum 5718 Euglenozoa other_Eukaryota 105 6.19e-24   NR AGT02546.1 5718 g40794 i0 58 0.747875354107649 88 36 73.9 1 48 308 15 102 AGT02546.1 cystathionine gamma-synthase [Herpetomonas muscarum] diamond 264 105 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Herpetomonas Herpetomonas muscarum
32086018 32086018 PRJNA781427_P_NODE_71318_length_258_cov_1.156757_g70434_i0 PRJNA781427 71318 258 1.156757 2.98443306 Trypanosoma 5690 Euglenozoa other_Eukaryota 43.1 0.0329   NR KAH8611747.1 5699 g70434 i0 32.8 1.55813953488372 67 39 70.9 1 208 26 104 170 KAH8611747.1 hypothetical protein ERJ75_000984200 [Trypanosoma vivax] diamond 402 43.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
32866187 32866187 PRJNA781427_P_NODE_58720_length_290_cov_1.506912_g57836_i0 PRJNA781427 58720 290 1.506912 4.3700448 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 49.3 3.11e-4   NR KAJ9453194.1 91374 g57836 i0 47 0.682758620689655 66 34 67.2 1 50 244 30 95 KAJ9453194.1 hypothetical protein DIPPA_06381 [Diplonema papillatum] diamond 198 49.3 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;