RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA781427" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA781427 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7139210 7139210 PRJNA781427_P_NODE_4146_length_1393_cov_3.605303_g3760_i0 PRJNA781427 4146 1393 3.605303 50.22187079 Pedinophyceae sp. YPF-7 765719 Plants Plants 256 1.04e-75   NR CAG9460272.1 765719 g3760 i0 35.8 1.72505384063173 399 232 82.7 5 92 1243 24 413 CAG9460272.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 2403 256 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
29863986 29863986 PRJNA781427_P_NODE_28811_length_435_cov_1.881215_g27930_i0 PRJNA781427 28811 435 1.881215 8.18328525 Scenedesmus sp. PABB 2909984 Plants Plants 46.2 0.0174   NR KAF8062055.1 2742167 g27930 i0 31.7 2.22758620689655 101 66 67.6 1 431 138 1160 1260 KAF8062055.1 hypothetical protein HT031_004315 [Scenedesmus sp. PABB004] diamond 969 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;