RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA781196" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA781196 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27780229 27780229 PRJNA781196_P_NODE_63484_length_244_cov_0.912281_g63107_i0 PRJNA781196 63484 244 0.912281 2.22596564 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 77.4 2.33e-14   NR MDA7930803.1 2562705 g63107 i0 50.6 8.11475409836066 77 37 94.7 1 3 233 22 97 MDA7930803.1 ubiquitin-like protein [Akkermansiaceae bacterium] diamond 1980 77.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
29011771 29011771 PRJNA781196_P_NODE_25288_length_343_cov_1.722222_g24911_i0 PRJNA781196 25288 343 1.722222 5.90722146 Phragmitibacter flavus 2576071 Bacteria Bacteria 48.1 0.00139   NR WP_138088455.1 2576071 g24911 i0 29.9 1.02332361516035 117 63 97.1 3 337 5 3 106 WP_138088455.1 hypothetical protein [Phragmitibacter flavus] diamond 351 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Phragmitibacter Phragmitibacter flavus
29295609 29295609 PRJNA781196_P_NODE_45969_length_264_cov_1.528796_g45592_i0 PRJNA781196 45969 264 1.528796 4.03602144 Opitutaceae bacterium 2006848 Bacteria Bacteria 83.6 3.71e-17   NR HEX9784778.1 2006848 g45592 i0 70.5 0.693181818181818 61 18 69.3 0 185 3 1 61 HEX9784778.1 pantoate--beta-alanine ligase [Opitutaceae bacterium] diamond 183 83.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29958746 29958746 PRJNA781196_P_NODE_6591_length_607_cov_1.215356_g6220_i0 PRJNA781196 6591 607 1.215356 7.37721092 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 92.4 9.35e-18   NR MCU0772034.1 2026799 g6220 i0 36.1 0.958813838550247 194 102 95.4 8 17 595 526 698 MCU0772034.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 582 92.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31412342 31412342 PRJNA781196_P_NODE_12776_length_456_cov_1.629243_g12399_i0 PRJNA781196 12776 456 1.629243 7.42934808 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 83.2 2.87e-15   NR PYJ08782.1 2026799 g12399 i0 42.4 1.98026315789474 139 69 89.5 3 452 45 156 286 PYJ08782.1 MAG: hypothetical protein DME25_00550 [Verrucomicrobiota bacterium] diamond 903 83.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32235192 32235192 PRJNA781196_P_NODE_59358_length_247_cov_0.896552_g58981_i0 PRJNA781196 59358 247 0.896552 2.21448344 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 99.4 4.22e-22   NR HAB15996.1 2026801 g58981 i0 77.6 1.44534412955466 58 13 70.4 0 1 174 481 538 HAB15996.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 357 99.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32708713 32708713 PRJNA781196_P_NODE_62000_length_245_cov_0.906977_g61623_i0 PRJNA781196 62000 245 0.906977 2.22209365 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 132 2.57e-35   NR MES2595503.1 2026799 g61623 i0 81.5 1.98367346938776 81 15 99.2 0 1 243 9 89 MES2595503.1 ABC transporter substrate-binding protein [Verrucomicrobiota bacterium] diamond 486 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;