RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA774958" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA774958 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13506432 13506432 PRJNA774958_P_NODE_31911_length_260_cov_1.235294_g31664_i0 PRJNA774958 31911 260 1.235294 3.2117644 Opisthokonta 33154 Fungi Fungi 139 3.4e-37   NR KAI9176065.1 1313167 g31664 i0 73.8 6.9 84 22 96.9 0 9 260 291 374 KAI9176065.1 S-adenosyl-L-homocysteine hydrolase [Blastocladiella emersonii ATCC 22665] diamond 1794 140 0.992857142857143 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
27663272 27663272 PRJNA774958_P_NODE_32164_length_258_cov_1.248649_g31917_i0 PRJNA774958 32164 258 1.248649 3.22151442 Opisthokonta 33154 Fungi Fungi 85.5 3.31e-17   NR KAI9221620.1 64508 g31917 i0 56.5 7.25581395348837 69 30 80.2 0 52 258 295 363 KAI9221620.1 hypothetical protein BC828DRAFT_380556 [Blastocladiella britannica] diamond 1872 86.3 0.990730011587486 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
29241858 29241858 PRJNA774958_P_NODE_9989_length_517_cov_1.096847_g9746_i0 PRJNA774958 9989 517 1.096847 5.67069899 Blastocladiales 4805 Fungi Fungi 76.6 6.16e-14   NR KAI9219043.1 64508 g9746 i0 52.4 2.81431334622824 84 29 48.7 1 313 62 71 143 KAI9219043.1 multi protein-bridging factor 1 [Blastocladiella britannica] diamond 1455 76.6 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
31949842 31949842 PRJNA774958_P_NODE_6677_length_637_cov_1.945035_g6449_i0 PRJNA774958 6677 637 1.945035 12.389872950000001 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 70.9 2.68e-10   NR KNE57521.1 578462 g6449 i0 55.1 1.33751962323391 49 22 23.1 0 484 630 102 150 KNE57521.1 hypothetical protein AMAG_03224 [Allomyces macrogynus ATCC 38327] diamond 852 70.9 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;