RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA774958" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA774958 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30726319 30726319 PRJNA774958_P_NODE_35714_length_247_cov_0.885057_g35467_i0 PRJNA774958 35714 247 0.885057 2.18609079 Viridiplantae 33090 Haptophyta other_Eukaryota 59.7 4.22e-8   NR KAL1500715.1 97485 g35467 i0 55.6 2.22267206477733 45 19 54.7 1 113 247 520 563 KAL1500715.1 hypothetical protein AB1Y20_013361 [Prymnesium parvum] diamond 549 60.1 0.993344425956739 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31190485 31190485 PRJNA774958_P_NODE_8535_length_561_cov_76.151639_g8297_i0 PRJNA774958 8535 561 76.151639 427.21069479 Prymnesium parvum 97485 Haptophyta other_Eukaryota 106 1.21e-25   NR KAL1499813.1 97485 g8297 i0 39.9 0.764705882352941 143 77 76.5 3 44 472 16 149 KAL1499813.1 hypothetical protein AB1Y20_012498 [Prymnesium parvum] diamond 429 106 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;