RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA773778" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA773778 · 20 ✖

analysis 1

  • diamond · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10135857 10135857 PRJNA773778_S_NODE_19908_length_330_cov_0.898833_g19758_i0 PRJNA773778 19908 330 0.898833 2.9661489 Methanothrix 2222 Archaea Archaea 214 1.6e-66   NR MDD3565626.1 90426 g19758 i0 99.1 1.98181818181818 109 1 99.1 0 2 328 87 195 MDD3565626.1 S-layer protein domain-containing protein [Methanothrix sp.] diamond 654 215 0.995348837209302 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
26736401 26736401 PRJNA773778_S_NODE_34441_length_268_cov_1.184615_g34291_i0 PRJNA773778 34441 268 1.184615 3.1747682 Methanofollis fontis 2052832 Archaea Archaea 170 4.13e-47   NR WP_130645632.1 2052832 g34291 i0 91 0.996268656716418 89 8 99.6 0 2 268 499 587 WP_130645632.1 MEMAR_RS02690 family S-layer glycoprotein [Methanofollis fontis] diamond 267 170 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis fontis
27274656 27274656 PRJNA773778_S_NODE_36363_length_262_cov_1.222222_g36213_i0 PRJNA773778 36363 262 1.222222 3.20222164 archaeon 1906665 Archaea Archaea 45.4 5.08e-4   NR RYY86201.1 1906665 g36213 i0 80.6 0.354961832061069 31 6 35.5 0 127 219 38 68 RYY86201.1 MAG: hypothetical protein EON63_06110 [archaeon] diamond 93 45.4 1 Archaea               archaeon
27337943 27337943 PRJNA773778_S_NODE_48443_length_241_cov_0.916667_g48293_i0 PRJNA773778 48443 241 0.916667 2.20916747 Methanofollis liminatans 2201 Archaea Archaea 147 1.01e-39   NR WP_157203248.1 2201 g48293 i0 91.3 0.995850622406639 80 7 99.6 0 240 1 15 94 WP_157203248.1 hypothetical protein [Methanofollis liminatans] diamond 240 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans
27401127 27401127 PRJNA773778_S_NODE_38123_length_257_cov_0.978261_g37973_i0 PRJNA773778 38123 257 0.978261 2.51413077 Methanothrix sp. 90426 Archaea Archaea 169 1.63e-51   NR MDD3565856.1 90426 g37973 i0 100 0.992217898832685 85 0 99.2 0 257 3 84 168 MDD3565856.1 DNRLRE domain-containing protein [Methanothrix sp.] diamond 255 169 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
27811686 27811686 PRJNA773778_S_NODE_5784_length_526_cov_1.675497_g5635_i0 PRJNA773778 5784 526 1.675497 8.81311422 Methanofollis tationis 81417 Archaea Archaea 279 3.4500000000000005e-86   NR WP_176788331.1 81417 g5635 i0 83.2 0.986692015209126 173 29 98.7 0 521 3 88 260 WP_176788331.1 MEMAR_RS02690 family S-layer glycoprotein [Methanofollis tationis] diamond 519 279 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis tationis
27842883 27842883 PRJNA773778_S_NODE_49344_length_231_cov_4.873418_g49194_i0 PRJNA773778 49344 231 4.873418 11.25759558 archaeon 1906665 Archaea Archaea 47 7.09e-5   NR RYY87159.1 1906665 g49194 i0 88 0.61038961038961 25 3 32.5 0 14 88 29 53 RYY87159.1 MAG: hypothetical protein EON63_04530 [archaeon] diamond 141 47 1 Archaea               archaeon
28379794 28379794 PRJNA773778_S_NODE_7526_length_478_cov_3.612346_g7376_i0 PRJNA773778 7526 478 3.612346 17.26701388 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 223 3.5399999999999996e-72   NR HET8856239.1 2169593 g7376 i0 88.5 3.35774058577406 139 15 86.6 1 474 61 1 139 HET8856239.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 1605 223 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
29011642 29011642 PRJNA773778_S_NODE_38188_length_256_cov_2.928962_g38038_i0 PRJNA773778 38188 256 2.928962 7.49814272 Candidatus Nanoarchaeia archaeon 2910166 Archaea Archaea 60.1 8.39e-10   NR HLC53649.1 2910166 g38038 i0 70.3 0.43359375 37 11 43.4 0 127 17 1 37 HLC53649.1 DUF5678 domain-containing protein [Candidatus Nanoarchaeia archaeon] diamond 111 60.1 1 Archaea   Nanobdellati Nanobdellota Candidatus Nanoarchaeia       Candidatus Nanoarchaeia archaeon
30021935 30021935 PRJNA773778_S_NODE_42211_length_249_cov_0.875000_g42061_i0 PRJNA773778 42211 249 0.875 2.17875 Methanothrix sp. 90426 Archaea Archaea 62.8 1.91e-9   NR MDD5769123.1 90426 g42061 i0 47.6 1.97590361445783 82 43 98.8 0 3 248 55 136 MDD5769123.1 DUF1646 family protein [Methanothrix sp.] diamond 492 62.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
30147901 30147901 PRJNA773778_S_NODE_11912_length_402_cov_5.404255_g11762_i0 PRJNA773778 11912 402 5.404255 21.7251051 archaeon 1906665 Archaea Archaea 120 8.61e-32   NR RYH28351.1 1906665 g11762 i0 65.6 0.694029850746269 93 31 69.4 1 402 124 64 155 RYH28351.1 MAG: hypothetical protein EON65_12555 [archaeon] diamond 279 120 1 Archaea               archaeon
30274784 30274784 PRJNA773778_S_NODE_37872_length_257_cov_3.347826_g37722_i0 PRJNA773778 37872 257 3.347826 8.60391282 archaeon 1906665 Archaea Archaea 72.8 6.97e-15   NR RYH06975.1 1906665 g37722 i0 76.4 0.642023346303502 55 13 64.2 0 250 86 1 55 RYH06975.1 MAG: hypothetical protein EON65_42235 [archaeon] diamond 165 72.8 1 Archaea               archaeon
30916133 30916133 PRJNA773778_S_NODE_46114_length_244_cov_0.900585_g45964_i0 PRJNA773778 46114 244 0.900585 2.1974274 Methanofollis 81416 Archaea Archaea 89.4 1.02e-18   NR WP_004039236.1 2201 g45964 i0 97.7 1.62295081967213 44 1 54.1 0 242 111 382 425 WP_004039236.1 translation elongation factor EF-1 subunit alpha [Methanofollis liminatans] diamond 396 90.1 0.992230854605993 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans
31253988 31253988 PRJNA773778_S_NODE_26615_length_296_cov_2.367713_g26465_i0 PRJNA773778 26615 296 2.367713 7.00843048 Methanolobus sp. 1874737 Archaea Archaea 195 1.34e-62   NR MDY0388914.1 1874737 g26465 i0 99 0.972972972972973 96 1 97.3 0 8 295 1 96 MDY0388914.1 metalloregulator ArsR/SmtB family transcription factor [Methanolobus sp.] diamond 288 195 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanolobus Methanolobus sp.
31317276 31317276 PRJNA773778_S_NODE_3315_length_628_cov_6.389189_g3170_i0 PRJNA773778 3315 628 6.389189 40.12410692 archaeon 1906665 Archaea Archaea 111 7.8e-26   NR RYG66636.1 1906665 g3170 i0 60.4 0.78343949044586 164 54 78.3 2 626 135 138 290 RYG66636.1 MAG: hypothetical protein EON64_09330 [archaeon] diamond 492 111 1 Archaea               archaeon
31854936 31854936 PRJNA773778_S_NODE_26817_length_295_cov_3.815315_g26667_i0 PRJNA773778 26817 295 3.815315 11.25517925 archaeon 1906665 Archaea Archaea 95.1 1.75e-20   NR MDP2438741.1 1906665 g26667 i0 43.6 1.11864406779661 110 40 89.5 2 293 30 314 423 MDP2438741.1 IBR domain-containing protein [archaeon] diamond 330 95.1 1 Archaea               archaeon
32139847 32139847 PRJNA773778_S_NODE_38758_length_255_cov_1.241758_g38608_i0 PRJNA773778 38758 255 1.241758 3.1664829 Methanofollis tationis 81417 Archaea Archaea 100 2.91e-22   NR WP_176788331.1 81417 g38608 i0 93.8 0.764705882352941 65 4 76.5 0 195 1 1 65 WP_176788331.1 MEMAR_RS02690 family S-layer glycoprotein [Methanofollis tationis] diamond 195 100 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis tationis
32298325 32298325 PRJNA773778_S_NODE_22079_length_317_cov_24.512295_g21929_i0 PRJNA773778 22079 317 24.512295 77.70397515 Methanofollis liminatans DSM 414 2201 Archaea Archaea 73.9 8.24e-14   NR EJG06063.1 28892 g21929 i0 67.2 0.634069400630915 67 17 61.5 2 234 40 112 175 EJG06063.1 hypothetical protein Metli_0085 [Methanofollis liminatans DSM 4140] diamond 201 73.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans
32329947 32329947 PRJNA773778_S_NODE_20859_length_324_cov_1.525896_g20709_i0 PRJNA773778 20859 324 1.525896 4.94390304 Methanofollis liminatans 2201 Archaea Archaea 195 2.12e-58   NR WP_004037746.1 2201 g20709 i0 94.4 1 108 6 100 0 324 1 14 121 WP_004037746.1 coenzyme-B sulfoethylthiotransferase subunit beta [Methanofollis liminatans] diamond 324 195 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans
32456366 32456366 PRJNA773778_S_NODE_5539_length_533_cov_7.093478_g5390_i0 PRJNA773778 5539 533 7.093478 37.80823774 archaeon 1906665 Archaea Archaea 132 1.0699999999999999e-32   NR RYH29319.1 1906665 g5390 i0 50.4 0.75984990619137 135 60 76 2 2 406 343 470 RYH29319.1 MAG: hypothetical protein EON65_08910 [archaeon] diamond 405 132 1 Archaea               archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;