RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA773778" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA773778 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27053426 27053426 PRJNA773778_S_NODE_11322_length_410_cov_2.284866_g11172_i0 PRJNA773778 11322 410 2.284866 9.3679506 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 60.1 1.04e-7   NR KAJ9467986.1 91374 g11172 i0 38.7 0.907317073170732 124 69 87.1 2 408 52 125 246 KAJ9467986.1 Zinc finger CCCH domain-containing protein 11 [Diplonema papillatum] diamond 372 60.1 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
29169322 29169322 PRJNA773778_S_NODE_6489_length_504_cov_17.529002_g6339_i0 PRJNA773778 6489 504 17.529002 88.34617008 Bodo saltans 75058 Euglenozoa other_Eukaryota 92.8 2.33e-20   NR CUG02225.1 75058 g6339 i0 40 1.19047619047619 100 59 59.5 1 92 391 45 143 CUG02225.1 Hypothetical protein, putative, partial [Bodo saltans] diamond 600 92.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
29326940 29326940 PRJNA773778_S_NODE_17169_length_348_cov_5.880000_g17019_i0 PRJNA773778 17169 348 5.88 20.4624 Euglena gracilis 3039 Euglenozoa other_Eukaryota 125 1.6e-33   NR 6ZJ3_SI 3039 g17019 i0 60.8 0.836206896551724 97 38 83.6 0 346 56 103 199 6ZJ3_SI Chain SI, Ribosomal protein eS7 [Euglena gracilis] diamond 291 125 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;