RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA773625" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA773625 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28001109 28001109 PRJNA773625_P_NODE_10805_length_162_cov_0.920354_g10790_i0 PRJNA773625 10805 162 0.920354 1.49097348 Megamonas sp. 2049033 Bacteria Bacteria 101 6.620000000000001e-26   NR WP_287793925.1 2049033 g10790 i0 96.2 0.981481481481482 53 2 98.1 0 161 3 15 67 WP_287793925.1 PTS sugar transporter subunit IIA, partial [Megamonas sp.] diamond 159 101 1 Bacteria   Bacillati Bacillota Negativicutes Selenomonadales Selenomonadaceae Megamonas Megamonas sp.
28032638 28032638 PRJNA773625_P_NODE_9485_length_165_cov_0.896552_g9470_i0 PRJNA773625 9485 165 0.896552 1.4793108 Enterocloster sp. 2719315 Bacteria Bacteria 101 9.86e-25   NR WP_337933109.1 2719315 g9470 i0 90.7 0.981818181818182 54 5 98.2 0 3 164 148 201 WP_337933109.1 HAD family hydrolase [Enterocloster sp.] diamond 162 101 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster sp.
31222175 31222175 PRJNA773625_P_NODE_8915_length_166_cov_0.888889_g8900_i0 PRJNA773625 8915 166 0.888889 1.47555574 Mediterraneibacter faecis 592978 Bacteria Bacteria 92.8 2.87e-20   NR WP_117961929.1 592978 g8900 i0 83.3 0.975903614457831 54 9 97.6 0 3 164 192 245 WP_117961929.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase [Mediterraneibacter faecis] diamond 162 92.8 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Mediterraneibacter faecis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;