RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA773247" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA773247 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7127398 7127398 PRJNA773247_P_NODE_10986_length_469_cov_1.398990_g10903_i0 PRJNA773247 10986 469 1.39899 6.5612631 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 196 1.3e-56   NR HEX9950667.1 2838334 g10903 i0 64.7 0.997867803837953 156 55 99.8 0 1 468 154 309 HEX9950667.1 histidine kinase [Rubricoccaceae bacterium] diamond 468 196 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
13502467 13502467 PRJNA773247_P_NODE_16791_length_357_cov_2.404930_g16707_i0 PRJNA773247 16791 357 2.40493 8.5856001 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 126 7.379999999999999e-31   NR HEX9952180.1 2838334 g16707 i0 76.2 1.40336134453782 84 20 70.6 0 12 263 1199 1282 HEX9952180.1 T9SS type A sorting domain-containing protein [Rubricoccaceae bacterium] diamond 501 126 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
17327047 17327047 PRJNA773247_P_NODE_13134_length_417_cov_7.616279_g13051_i0 PRJNA773247 13134 417 7.616279 31.75988343 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 77.8 1.42e-13   NR HEX8298805.1 2838334 g13051 i0 55 0.575539568345324 80 35 56.8 1 78 314 420 499 HEX8298805.1 phage portal protein [Rubricoccaceae bacterium] diamond 240 77.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;