RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA773247" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 6 ✖

bioproject 1

  • PRJNA773247 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27053383 27053383 PRJNA773247_P_NODE_13102_length_418_cov_5.298551_g13019_i0 PRJNA773247 13102 418 5.298551 22.14794318 Persicimonas sp. 2766932 Bacteria Bacteria 84 3.07e-16   NR MFP4598045.1 2766932 g13019 i0 33.9 0.911483253588517 127 80 90.4 2 379 2 147 270 MFP4598045.1 hypothetical protein [Persicimonas sp.] diamond 381 84 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.
28032622 28032622 PRJNA773247_P_NODE_28345_length_261_cov_0.968085_g28261_i0 PRJNA773247 28345 261 0.968085 2.52670185 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 97.4 1.4000000000000002e-22   NR MFU8803619.1 2740543 g28261 i0 52.3 1.01149425287356 88 41 100 1 261 1 69 156 MFU8803619.1 DUF2213 domain-containing protein [Bradymonadaceae bacterium] diamond 264 97.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
28095625 28095625 PRJNA773247_P_NODE_27125_length_267_cov_3.350515_g27041_i0 PRJNA773247 27125 267 3.350515 8.94587505 Deltaproteobacteria bacterium 21-66-5 1970506 Bacteria Bacteria 82.8 4.21e-17   NR OYV72105.1 1970506 g27041 i0 63.5 2.1685393258427 63 23 70.8 0 205 17 43 105 OYV72105.1 MAG: hypothetical protein B7Z74_06070, partial [Deltaproteobacteria bacterium 21-66-5] diamond 579 82.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium 21-66-5
28316725 28316725 PRJNA773247_P_NODE_4846_length_820_cov_5.938420_g4772_i0 PRJNA773247 4846 820 5.93842 48.695044 SAR324 cluster bacterium 2024889 Bacteria Bacteria 137 1.49e-35   NR MCH7478755.1 2024889 g4772 i0 49.3 0.534146341463415 146 74 53.4 0 25 462 56 201 MCH7478755.1 hypothetical protein [SAR324 cluster bacterium] diamond 438 137 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
28884871 28884871 PRJNA773247_P_NODE_12128_length_439_cov_10.284153_g12045_i0 PRJNA773247 12128 439 10.284153 45.14743167 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 Bacteria Bacteria 78.6 4.85e-15   NR PKN43857.1 2013748 g12045 i0 36.5 0.785876993166287 115 73 78.6 0 95 439 21 135 PKN43857.1 MAG: replicative DNA helicase, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] diamond 345 78.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20
32497509 32497509 PRJNA773247_P_NODE_6339_length_679_cov_9.042904_g6258_i0 PRJNA773247 6339 679 9.042904 61.40131816 root 1 Root_unresolved Root_unresolved 140 1.5099999999999998e-37   NR MFP4600898.1 2766932 g6258 i0 59.5 1.47569955817379 111 45 49 0 341 9 2 112 MFP4600898.1 DUF5662 family protein [Persicimonas sp.] diamond 1002 140 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;