RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA772154" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA772154 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28127262 28127262 PRJNA772154_P_NODE_20105_length_248_cov_0.891429_g19920_i0 PRJNA772154 20105 248 0.891429 2.21074392 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 68.6 2.33e-12   NR MES2923688.1 2026799 g19920 i0 58.3 0.725806451612903 60 23 70.2 1 248 75 87 146 MES2923688.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 180 68.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28411433 28411433 PRJNA772154_P_NODE_21906_length_244_cov_0.912281_g21721_i0 PRJNA772154 21906 244 0.912281 2.22596564 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0197   NR HAS84219.1 2026799 g21721 i0 33.3 1.14344262295082 93 43 91 2 9 230 351 443 HAS84219.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 279 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29200848 29200848 PRJNA772154_P_NODE_22709_length_242_cov_0.923077_g22524_i0 PRJNA772154 22709 242 0.923077 2.23384634 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 139 4.3499999999999997e-38   NR MDP6795881.1 2026799 g22524 i0 77.5 1.98347107438017 80 18 99.2 0 240 1 236 315 MDP6795881.1 glycosyltransferase family 4 protein [Verrucomicrobiota bacterium] diamond 480 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32108040 32108040 PRJNA772154_P_NODE_19178_length_250_cov_0.881356_g18993_i0 PRJNA772154 19178 250 0.881356 2.20339 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 150 4.1199999999999984e-43   NR MBK8001309.1 2026799 g18993 i0 89.2 0.996 83 9 99.6 0 2 250 37 119 MBK8001309.1 DUF1553 domain-containing protein [Verrucomicrobiota bacterium] diamond 249 150 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32865942 32865942 PRJNA772154_P_NODE_21000_length_246_cov_0.901734_g20815_i0 PRJNA772154 21000 246 0.901734 2.21826564 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 84.3 8.78e-17   NR PWU13202.1 2026799 g20815 i0 52.5 1.89024390243902 80 37 96.3 1 9 245 1014 1093 PWU13202.1 MAG: hypothetical protein C5B50_19780 [Verrucomicrobiota bacterium] diamond 465 84.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;