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contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA772154" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 18 ✖

tax_kingdom 1

bioproject 1

  • PRJNA772154 · 18 ✖

analysis 1

  • diamond · 18 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10951543 10951543 PRJNA772154_P_NODE_22169_length_243_cov_0.917647_g21984_i0 PRJNA772154 22169 243 0.917647 2.22988221 Archangium 47 Bacteria Bacteria 132 6.16e-36   NR MDP1821831.1 1872627 g21984 i0 83.1 2.91358024691358 77 13 95.1 0 231 1 26 102 MDP1821831.1 hypothetical protein [Archangium sp.] diamond 708 132 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
22424906 22424906 PRJNA772154_P_NODE_8638_length_395_cov_1.500000_g8453_i0 PRJNA772154 8638 395 1.5 5.925 Myxococcia 32015 Bacteria Bacteria 146 8.23e-38   NR MBX3186075.1 1971228 g8453 i0 53.1 8.89367088607595 130 61 98.7 0 393 4 718 847 MBX3186075.1 AAA family ATPase [Labilithrix sp.] diamond 3513 146 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
26673125 26673125 PRJNA772154_P_NODE_14721_length_284_cov_0.928910_g14536_i0 PRJNA772154 14721 284 0.92891 2.6381044 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 52 3.26e-5   NR MDR2443685.1 2026735 g14536 i0 33.3 1.04577464788732 99 56 94 1 267 1 184 282 MDR2443685.1 transposase [Deltaproteobacteria bacterium] diamond 297 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27179528 27179528 PRJNA772154_P_NODE_18462_length_251_cov_0.876404_g18277_i0 PRJNA772154 18462 251 0.876404 2.19977404 Myxococcota bacterium 2818507 Bacteria Bacteria 175 2.1099999999999998e-54   NR MEZ4280774.1 2818507 g18277 i0 100 0.99203187250996006 83 0 99.2 0 2 250 68 150 MEZ4280774.1 transcriptional repressor [Myxococcota bacterium] diamond 249 175 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28158971 28158971 PRJNA772154_P_NODE_21785_length_244_cov_0.912281_g21600_i0 PRJNA772154 21785 244 0.912281 2.22596564 Polyangiaceae bacterium 2268199 Bacteria Bacteria 152 1.34e-44   NR HSC85711.1 2268199 g21600 i0 92.6 0.995901639344262 81 6 99.6 0 244 2 33 113 HSC85711.1 methyltransferase domain-containing protein [Polyangiaceae bacterium] diamond 243 152 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28569120 28569120 PRJNA772154_P_NODE_13287_length_302_cov_1.362445_g13102_i0 PRJNA772154 13287 302 1.362445 4.1145839 Archangium sp. 1872627 Bacteria Bacteria 144 1.98e-40   NR MFT3708157.1 1872627 g13102 i0 76 0.993377483443709 100 24 99.3 0 2 301 136 235 MFT3708157.1 hypothetical protein [Archangium sp.] diamond 300 144 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28569121 28569121 PRJNA772154_P_NODE_17667_length_253_cov_0.866667_g17482_i0 PRJNA772154 17667 253 0.866667 2.19266751 Myxococcota bacterium 2818507 Bacteria Bacteria 169 3.7999999999999997e-47   NR MEZ4282972.1 2818507 g17482 i0 100 0.99604743083004 84 0 99.6 0 1 252 327 410 MEZ4282972.1 DUF3604 domain-containing protein [Myxococcota bacterium] diamond 252 169 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28578845 28578845 PRJNA772154_P_NODE_17967_length_252_cov_0.871508_g17782_i0 PRJNA772154 17967 252 0.871508 2.19620016 Myxococcia 32015 Bacteria Bacteria 120 1.27e-29   NR HEX3475790.1 2212474 g17782 i0 57.8 1.97619047619048 83 35 98.8 0 3 251 94 176 HEX3475790.1 arabinan endo-1,5-alpha-L-arabinosidase [Kofleriaceae bacterium] diamond 498 120 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28727084 28727084 PRJNA772154_P_NODE_18287_length_252_cov_0.871508_g18102_i0 PRJNA772154 18287 252 0.871508 2.19620016 Archangium sp. 1872627 Bacteria Bacteria 132 9.42e-34   NR MDP3153305.1 1872627 g18102 i0 79.8 2.98809523809524 84 17 100 0 252 1 1153 1236 MDP3153305.1 transglutaminase domain-containing protein [Archangium sp.] diamond 753 132 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28894364 28894364 PRJNA772154_P_NODE_20068_length_248_cov_0.891429_g19883_i0 PRJNA772154 20068 248 0.891429 2.21074392 Bacteria 2 Bacteria Bacteria 73.2 7.65e-13   NR MCC7382989.1 2026735 g19883 i0 50.6 1.91129032258065 79 39 95.6 0 245 9 603 681 MCC7382989.1 MFS transporter [Deltaproteobacteria bacterium] diamond 474 73.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28916275 28916275 PRJNA772154_P_NODE_19628_length_249_cov_0.886364_g19443_i0 PRJNA772154 19628 249 0.886364 2.20704636 Archangium sp. 1872627 Bacteria Bacteria 94 4.7500000000000005e-21   NR MBL8910636.1 1872627 g19443 i0 60.3 0.759036144578313 63 25 75.9 0 191 3 115 177 MBL8910636.1 hypothetical protein [Archangium sp.] diamond 189 94 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
29705433 29705433 PRJNA772154_P_NODE_19970_length_248_cov_0.891429_g19785_i0 PRJNA772154 19970 248 0.891429 2.21074392 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.1 2.88e-8   NR MBI3543061.1 2026735 g19785 i0 40.3 0.931451612903226 77 44 93.1 1 240 10 153 227 MBI3543061.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 231 60.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30558602 30558602 PRJNA772154_P_NODE_20893_length_246_cov_0.901734_g20708_i0 PRJNA772154 20893 246 0.901734 2.21826564 Labilithrix sp. 1971228 Bacteria Bacteria 102 3.509999999999999e-23   NR MBX3228340.1 1971228 g20708 i0 75.4 0.792682926829268 65 16 79.3 0 2 196 371 435 MBX3228340.1 hypothetical protein [Labilithrix sp.] diamond 195 102 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31317223 31317223 PRJNA772154_P_NODE_22155_length_243_cov_0.917647_g21970_i0 PRJNA772154 22155 243 0.917647 2.22988221 Archangium gephyra 48 Bacteria Bacteria 68.2 4.19e-11   NR PZR05792.1 48 g21970 i0 44.9 1.91358024691358 78 41 96.3 2 239 6 4837 4912 PZR05792.1 MAG: hypothetical protein DI536_31570 [Archangium gephyra] diamond 465 68.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
31548429 31548429 PRJNA772154_P_NODE_8276_length_406_cov_1.705706_g8091_i0 PRJNA772154 8276 406 1.705706 6.92516636 Pseudomonadati 3379134 Bacteria Bacteria 140 3.39e-36   NR WP_309896008.1 1872627 g8091 i0 47.3 9.80541871921182 148 63 98.3 1 6 404 403 550 WP_309896008.1 LysM peptidoglycan-binding domain-containing protein [Archangium sp.] diamond 3981 141 0.99290780141844 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
31823161 31823161 PRJNA772154_P_NODE_14137_length_290_cov_1.396313_g13952_i0 PRJNA772154 14137 290 1.396313 4.0493077 Labilithrix sp. 1971228 Bacteria Bacteria 94 5.1e-20   NR MDB4946204.1 1971228 g13952 i0 60.4 0.993103448275862 96 38 99.3 0 3 290 28 123 MDB4946204.1 integrase family protein [Labilithrix sp.] diamond 288 94 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32171535 32171535 PRJNA772154_P_NODE_20458_length_247_cov_0.896552_g20273_i0 PRJNA772154 20458 247 0.896552 2.21448344 Labilithrix luteola 1391654 Bacteria Bacteria 57.4 2.35e-7   NR WP_146654229.1 1391654 g20273 i0 59.6 1.1417004048583 47 19 57.1 0 1 141 259 305 WP_146654229.1 hypothetical protein [Labilithrix luteola] diamond 282 57.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
32771405 32771405 PRJNA772154_P_NODE_18580_length_251_cov_0.876404_g18395_i0 PRJNA772154 18580 251 0.876404 2.19977404 Archangium sp. 1872627 Bacteria Bacteria 154 2.2499999999999994e-42   NR MDP3151341.1 1872627 g18395 i0 75.9 2.97609561752988 83 20 99.2 0 250 2 73 155 MDP3151341.1 sigma-54-dependent Fis family transcriptional regulator [Archangium sp.] diamond 747 154 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;