RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA772154" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA772154 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28610368 28610368 PRJNA772154_P_NODE_9267_length_379_cov_0.839869_g9082_i0 PRJNA772154 9267 379 0.839869 3.18310351 Aspidochirotida 7682 Echinodermata other_Eukaryota 55.5 1.41e-6   NR KAJ8033069.1 206669 g9082 i0 50.9 5.52506596306069 55 27 43.5 0 355 191 56 110 KAJ8033069.1 hypothetical protein HOLleu_23200 [Holothuria leucospilota] diamond 2094 55.8 0.99462365591397806 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
30685087 30685087 PRJNA772154_P_NODE_6653_length_472_cov_3.443609_g6468_i0 PRJNA772154 6653 472 3.443609 16.25383448 Anneissia japonica 1529436 Echinodermata other_Eukaryota 109 1.29e-26   NR XP_033124120.1 1529436 g6468 i0 42 0.908898305084746 143 82 90.9 1 466 38 3 144 XP_033124120.1 uncharacterized mitochondrial protein AtMg00810-like [Anneissia japonica] diamond 429 109 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
32834422 32834422 PRJNA772154_P_NODE_18840_length_250_cov_1.135593_g18655_i0 PRJNA772154 18840 250 1.135593 2.8389825 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 50.4 5.91e-5   NR PIK37656.1 307972 g18655 i0 38.8 2.88 80 49 96 0 241 2 109 188 PIK37656.1 hypothetical protein BSL78_25527 [Apostichopus japonicus] diamond 720 50.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;