RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA772154" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA772154 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29958471 29958471 PRJNA772154_P_NODE_17651_length_253_cov_0.866667_g17466_i0 PRJNA772154 17651 253 0.866667 2.19266751 Trypanosoma equiperdum 5694 Euglenozoa other_Eukaryota 87 1.08e-17   NR XP_067080238.1 5694 g17466 i0 51.4 3.5098814229249 74 36 87.7 0 32 253 1 74 XP_067080238.1 Poly(A)-specific ribonuclease PARN-1 [Trypanosoma equiperdum] diamond 888 87 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma equiperdum
32708474 32708474 PRJNA772154_P_NODE_19640_length_249_cov_0.886364_g19455_i0 PRJNA772154 19640 249 0.886364 2.20704636 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 125 9.1e-34   NR XP_002680268.1 5762 g19455 i0 67.1 0.987951807228916 82 27 98.8 0 248 3 105 186 XP_002680268.1 uncharacterized protein NAEGRDRAFT_64591 [Naegleria gruberi] diamond 246 125 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;