RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA771359" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA771359 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29137795 29137795 PRJNA771359_S_NODE_2489_length_212_cov_2.645714_g2406_i0 PRJNA771359 2489 212 2.645714 5.60891368 Fontisphaera persica 2974023 Bacteria Bacteria 43.1 0.0119   NR WP_283847502.1 2974023 g2406 i0 52.6 0.806603773584906 57 26 79.2 1 171 4 18 74 WP_283847502.1 hypothetical protein [Fontisphaera persica] diamond 171 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
30369717 30369717 PRJNA771359_S_NODE_2772_length_201_cov_4.231707_g2689_i0 PRJNA771359 2772 201 4.231707 8.50573107 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 48.1 1.97e-5   NR PYJ85085.1 2026799 g2689 i0 63.2 0.567164179104478 38 14 56.7 0 169 56 28 65 PYJ85085.1 MAG: hypothetical protein DME22_10395 [Verrucomicrobiota bacterium] diamond 114 48.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30653435 30653435 PRJNA771359_S_NODE_3373_length_183_cov_1.273973_g3290_i0 PRJNA771359 3373 183 1.273973 2.33137059 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 48.9 1.08e-4   NR HEX5221895.1 2499141 g3290 i0 49.2 1 61 29 96.7 2 5 181 136 196 HEX5221895.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 183 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31570498 31570498 PRJNA771359_S_NODE_3016_length_193_cov_2.262821_g2933_i0 PRJNA771359 3016 193 2.262821 4.36724453 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 43.5 0.00241   NR HUB87309.1 2499141 g2933 i0 60 0.544041450777202 35 14 54.4 0 28 132 3 37 HUB87309.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 105 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;