RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA771359" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA771359 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28537822 28537822 PRJNA771359_S_NODE_2227_length_224_cov_2.518717_g2144_i0 PRJNA771359 2227 224 2.518717 5.64192608 Rubripirellula amarantea 2527999 Bacteria Bacteria 44.3 0.00855   NR WP_146514975.1 2527999 g2144 i0 44.4 1.64732142857143 54 30 72.3 0 52 213 311 364 WP_146514975.1 beta strand repeat-containing protein [Rubripirellula amarantea] diamond 369 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rubripirellula Rubripirellula amarantea
31064603 31064603 PRJNA771359_S_NODE_115_length_820_cov_2.701149_g47_i0 PRJNA771359 115 820 2.701149 22.1494218 Phycisphaerales bacterium 2052180 Bacteria Bacteria 67 2.07e-8   NR UCE58659.1 2052180 g47 i0 39.1 0.504878048780488 138 78 48.7 3 400 2 383 519 UCE58659.1 MAG: hypothetical protein JSU63_14595 [Phycisphaerales bacterium] diamond 414 67 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;