RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA771359" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA771359 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10951163 10951163 PRJNA771359_S_NODE_4269_length_164_cov_1.196850_g4186_i0 PRJNA771359 4269 164 1.19685 1.962834 Vannella simplex 197532 Discosea other_Eukaryota 86.3 2.28e-18   NR AUO29162.1 197532 g4186 i0 82.4 0.932926829268293 51 9 93.3 0 164 12 38 88 AUO29162.1 NADH dehydrogenase subunit 1 [Vannella simplex] diamond 153 86.3 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
20333184 20333184 PRJNA771359_S_NODE_2516_length_211_cov_1.701149_g2433_i0 PRJNA771359 2516 211 1.701149 3.58942439 root 1 Root_unresolved Root_unresolved 138 5.209999999999999e-38   NR AUO29168.1 197532 g2433 i0 88.6 1.99052132701422 70 8 99.5 0 210 1 262 331 AUO29168.1 cytochrome oxidase subunit 2 [Vannella simplex] diamond 420 138 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
27717105 27717105 PRJNA771359_S_NODE_1804_length_249_cov_2.160377_g1721_i0 PRJNA771359 1804 249 2.160377 5.37933873 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.1 1.6e-6   NR XP_004348720.1 1257118 g1721 i0 52.5 0.481927710843373 40 19 48.2 0 248 129 91 130 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 120 53.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28790096 28790096 PRJNA771359_S_NODE_3607_length_177_cov_2.714286_g3524_i0 PRJNA771359 3607 177 2.714286 4.80428622 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.8 1.45e-8   NR XP_004334493.1 1257118 g3524 i0 46.8 1.59322033898305 47 21 76.3 2 175 41 25 69 XP_004334493.1 uncharacterized protein ACA1_330540 [Acanthamoeba castellanii str. Neff] diamond 282 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29200845 29200845 PRJNA771359_S_NODE_3069_length_192_cov_1.251613_g2986_i0 PRJNA771359 3069 192 1.251613 2.40309696 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 101 3.3899999999999996e-24   NR XP_004341414.1 1257118 g2986 i0 75.4 0.953125 61 15 95.3 0 188 6 20 80 XP_004341414.1 Factin-capping protein subunit alpha-2, putative [Acanthamoeba castellanii str. Neff] diamond 183 101 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31696779 31696779 PRJNA771359_S_NODE_4277_length_164_cov_0.897638_g4194_i0 PRJNA771359 4277 164 0.897638 1.47212632 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 5.02e-18   NR XP_004358308.1 1257118 g4194 i0 70.9 1.00609756097561 55 15 98.8 1 1 162 169 223 XP_004358308.1 papain family cysteine protease subfamily protein [Acanthamoeba castellanii str. Neff] diamond 165 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;