RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA771359" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA771359 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28042075 28042075 PRJNA771359_S_NODE_4325_length_163_cov_1.198413_g4242_i0 PRJNA771359 4325 163 1.198413 1.95341319 Bacillota 1239 Bacteria Bacteria 52 6.98e-6   NR WP_073338434.1 40575 g4242 i0 46.8 10.0122699386503 47 25 86.5 0 142 2 1215 1261 WP_073338434.1 SdrD B-like domain-containing protein [Clostridium grantii] diamond 1632 52.4 0.99236641221374 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium grantii
31421680 31421680 PRJNA771359_S_NODE_4196_length_165_cov_1.515625_g4113_i0 PRJNA771359 4196 165 1.515625 2.50078125 Bacillati 1783272 Bacteria Bacteria 112 2.0800000000000004e-27   NR WP_304716840.1 1280 g4113 i0 100 1.96363636363636 54 0 98.2 0 2 163 370 423 WP_304716840.1 DUF3526 domain-containing protein, partial [Staphylococcus aureus] diamond 324 112 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
32266498 32266498 PRJNA771359_S_NODE_3318_length_184_cov_2.074830_g3235_i0 PRJNA771359 3318 184 2.07483 3.8176872 Clostridium sp. BSD278 1506 Bacteria Bacteria 45.4 0.00197   NR WP_207736696.1 2787146 g3235 i0 45.3 1.22282608695652 75 24 96.2 4 2 178 3243 3316 WP_207736696.1 SpaA isopeptide-forming pilin-related protein [Clostridium sp. BSD2780061688b_171218_E8] diamond 225 45.4 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp. BSD2780061688b_171218_E8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;