RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA771359" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA771359 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3298221 3298221 PRJNA771359_S_NODE_1843_length_246_cov_1.325359_g1760_i0 PRJNA771359 1843 246 1.325359 3.26038314 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 153 3.88e-41   NR AAA33205.1 44689 g1760 i0 89 10 82 9 100 0 246 1 458 539 AAA33205.1 elongation factor 2 [Dictyostelium discoideum] diamond 2460 154 0.993506493506494 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
10951163 10951163 PRJNA771359_S_NODE_4269_length_164_cov_1.196850_g4186_i0 PRJNA771359 4269 164 1.19685 1.962834 Vannella simplex 197532 Discosea other_Eukaryota 86.3 2.28e-18   NR AUO29162.1 197532 g4186 i0 82.4 0.932926829268293 51 9 93.3 0 164 12 38 88 AUO29162.1 NADH dehydrogenase subunit 1 [Vannella simplex] diamond 153 86.3 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
13500771 13500771 PRJNA771359_S_NODE_2091_length_230_cov_2.844560_g2008_i0 PRJNA771359 2091 230 2.84456 6.542488 Dictyostelium purpureum 5786 Evosea other_Eukaryota 116 2.54e-30   NR XP_003283628.1 5786 g2008 i0 72 4.89130434782609 75 21 97.8 0 3 227 48 122 XP_003283628.1 40S ribosomal protein S6 [Dictyostelium purpureum] diamond 1125 116 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
19873805 19873805 PRJNA771359_S_NODE_2496_length_212_cov_1.205714_g2413_i0 PRJNA771359 2496 212 1.205714 2.55611368 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 125 1.4099999999999998e-31   NR PRP84231.1 1890364 g2413 i0 94.3 1.9811320754717 70 4 99.1 0 1 210 973 1042 PRP84231.1 sensor histidine kinase/response regulator [Planoprotostelium fungivorum] diamond 420 125 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
20333184 20333184 PRJNA771359_S_NODE_2516_length_211_cov_1.701149_g2433_i0 PRJNA771359 2516 211 1.701149 3.58942439 root 1 Root_unresolved Root_unresolved 138 5.209999999999999e-38   NR AUO29168.1 197532 g2433 i0 88.6 1.99052132701422 70 8 99.5 0 210 1 262 331 AUO29168.1 cytochrome oxidase subunit 2 [Vannella simplex] diamond 420 138 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
24973645 24973645 PRJNA771359_S_NODE_2280_length_222_cov_2.486486_g2197_i0 PRJNA771359 2280 222 2.486486 5.51999892 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 132 1.26e-36   NR KAF2070957.1 133409 g2197 i0 80.6 8.7027027027027 72 14 97.3 0 220 5 8 79 KAF2070957.1 hypothetical protein CYY_007730 [Polysphondylium violaceum] diamond 1932 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27717105 27717105 PRJNA771359_S_NODE_1804_length_249_cov_2.160377_g1721_i0 PRJNA771359 1804 249 2.160377 5.37933873 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.1 1.6e-6   NR XP_004348720.1 1257118 g1721 i0 52.5 0.481927710843373 40 19 48.2 0 248 129 91 130 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 120 53.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28790096 28790096 PRJNA771359_S_NODE_3607_length_177_cov_2.714286_g3524_i0 PRJNA771359 3607 177 2.714286 4.80428622 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.8 1.45e-8   NR XP_004334493.1 1257118 g3524 i0 46.8 1.59322033898305 47 21 76.3 2 175 41 25 69 XP_004334493.1 uncharacterized protein ACA1_330540 [Acanthamoeba castellanii str. Neff] diamond 282 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29200845 29200845 PRJNA771359_S_NODE_3069_length_192_cov_1.251613_g2986_i0 PRJNA771359 3069 192 1.251613 2.40309696 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 101 3.3899999999999996e-24   NR XP_004341414.1 1257118 g2986 i0 75.4 0.953125 61 15 95.3 0 188 6 20 80 XP_004341414.1 Factin-capping protein subunit alpha-2, putative [Acanthamoeba castellanii str. Neff] diamond 183 101 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29927086 29927086 PRJNA771359_S_NODE_431_length_462_cov_1.637647_g350_i0 PRJNA771359 431 462 1.637647 7.56592914 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 133 2.02e-33   NR PRP74799.1 1890364 g350 i0 52.7 0.850649350649351 131 59 85.1 1 459 67 387 514 PRP74799.1 actin binding protein [Planoprotostelium fungivorum] diamond 393 133 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31696779 31696779 PRJNA771359_S_NODE_4277_length_164_cov_0.897638_g4194_i0 PRJNA771359 4277 164 0.897638 1.47212632 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 5.02e-18   NR XP_004358308.1 1257118 g4194 i0 70.9 1.00609756097561 55 15 98.8 1 1 162 169 223 XP_004358308.1 papain family cysteine protease subfamily protein [Acanthamoeba castellanii str. Neff] diamond 165 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32392838 32392838 PRJNA771359_S_NODE_2839_length_199_cov_2.129630_g2756_i0 PRJNA771359 2839 199 2.12963 4.2379637 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 98.6 1.13e-23   NR KAH3757673.1 1580589 g2756 i0 64.6 4.95979899497487 65 23 98 0 195 1 34 98 KAH3757673.1 60S ribosomal protein L10a [Pelomyxa schiedti] diamond 987 98.6 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;