RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA770826" and tax_phylum = "Gastrotricha"

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tax_superkingdom 1

tax_phylum 1

  • Gastrotricha · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA770826 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24973600 24973600 PRJNA770826_P_NODE_7740_length_294_cov_1.273469_g7569_i0 PRJNA770826 7740 294 1.273469 3.74399886 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 141 2.36e-38   NR YP_009136570.1 1194616 g7569 i0 91.9 0.755102040816326 74 6 75.5 0 289 68 90 163 YP_009136570.1 cytochrome b [Lepidodermella squamata] diamond 222 141 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
28190017 28190017 PRJNA770826_P_NODE_14846_length_209_cov_1.943750_g14675_i0 PRJNA770826 14846 209 1.94375 4.0624375 Lepidodermella squamata 1194616 Gastrotricha other_Eukaryota 89.4 3.32e-21   NR YP_009136578.1 1194616 g14675 i0 95.9 0.703349282296651 49 2 70.3 0 147 1 19 67 YP_009136578.1 NADH dehydrogenase subunit 3 [Lepidodermella squamata] diamond 147 89.4 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Lepidodermella Lepidodermella squamata
31507218 31507218 PRJNA770826_P_NODE_9116_length_268_cov_1.821918_g8945_i0 PRJNA770826 9116 268 1.821918 4.88274024 Litigonotus ghinii 3104745 Gastrotricha other_Eukaryota 103 5.61e-25   NR XCN99738.1 3104745 g8945 i0 71.3 0.895522388059702 80 23 89.6 0 5 244 31 110 XCN99738.1 ATP synthase F0 subunit 6 [Litigonotus ghinii] diamond 240 103 1 Eukaryota Opisthokonta Metazoa Gastrotricha   Chaetonotida Chaetonotidae Litigonotus Litigonotus ghinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;