RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA770361" and tax_phylum = "Atribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA770361 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27717038 27717038 PRJNA770361_P_NODE_13644_length_253_cov_0.866667_g13549_i0 PRJNA770361 13644 253 0.866667 2.19266751 Atribacterota bacterium 2952890 Bacteria Bacteria 167 4.459999999999999e-48   NR MDD5016399.1 2952890 g13549 i0 96.4 5.97628458498024 84 3 99.6 0 252 1 40 123 MDD5016399.1 endonuclease Q family protein [Atribacterota bacterium] diamond 1512 167 1 Bacteria   Pseudomonadati Atribacterota         Atribacterota bacterium
29178792 29178792 PRJNA770361_P_NODE_18009_length_244_cov_0.912281_g17914_i0 PRJNA770361 18009 244 0.912281 2.22596564 Bacteria 2 Bacteria Bacteria 161 1.83e-45   NR PKP54779.1 2013676 g17914 i0 98.8 3.98360655737705 81 1 99.6 0 2 244 142 222 PKP54779.1 MAG: sodium:proton antiporter, partial [Candidatus Atribacteria bacterium HGW-Atribacteria-1] diamond 972 161 1 Bacteria   Pseudomonadati Atribacterota         Candidatus Atribacteria bacterium HGW-Atribacteria-1
29241806 29241806 PRJNA770361_P_NODE_14949_length_250_cov_0.881356_g14854_i0 PRJNA770361 14949 250 0.881356 2.20339 Pseudomonadati 3379134 Bacteria Bacteria 149 1.0899999999999999e-43   NR TET09248.1 2053509 g14854 i0 98.8 3.888 81 1 97.2 0 3 245 56 136 TET09248.1 MAG: hypoxanthine phosphoribosyltransferase [Candidatus Atribacteria bacterium] diamond 972 149 1 Bacteria   Pseudomonadati Atribacterota Atribacteria       Candidatus Atribacteria bacterium
30969682 30969682 PRJNA770361_P_NODE_18894_length_242_cov_0.923077_g18799_i0 PRJNA770361 18894 242 0.923077 2.23384634 Atribacterota bacterium 2952890 Bacteria Bacteria 156 3.979999999999999e-47   NR MDD3715228.1 2952890 g18799 i0 100 1.83471074380165 74 0 91.7 0 222 1 1 74 MDD3715228.1 pseudouridine synthase [Atribacterota bacterium] diamond 444 156 1 Bacteria   Pseudomonadati Atribacterota         Atribacterota bacterium
32434281 32434281 PRJNA770361_P_NODE_17859_length_244_cov_0.912281_g17764_i0 PRJNA770361 17859 244 0.912281 2.22596564 Atribacterota 67818 Bacteria Bacteria 155 9.089999999999997e-42   NR OGD15771.1 1797291 g17764 i0 95.1 13.9426229508197 81 4 99.6 0 2 244 167 247 OGD15771.1 MAG: DNA polymerase III subunit alpha [Candidatus Sediminicultor quintus] diamond 3402 156 0.993589743589744 Bacteria   Pseudomonadati Atribacterota Candidatus Phoenicimicrobiia Candidatus Pheonicimicrobiales Candidatus Phoenicimicrobiaceae Candidatus Sediminicultor Candidatus Sediminicultor quintus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;