RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA768450" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA768450 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27147628 27147628 PRJNA768450_S_NODE_14622_length_192_cov_0.636364_g14573_i0 PRJNA768450 14622 192 0.636364 1.22181888 Gordonia amicalis 89053 Bacteria Bacteria 41.2 0.0117   NR MDV6311098.1 89053 g14573 i0 38.2 0.859375 55 32 85.9 2 10 174 7 59 MDV6311098.1 hypothetical protein [Gordonia amicalis] diamond 165 41.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia amicalis
31602004 31602004 PRJNA768450_S_NODE_10496_length_217_cov_0.666667_g10447_i0 PRJNA768450 10496 217 0.666667 1.44666739 Arsenicicoccus sp. oral taxon 19 1872639 Bacteria Bacteria 42.7 0.0268   NR WP_156188129.1 1658671 g10447 i0 32.2 0.815668202764977 59 37 81.6 1 211 35 376 431 WP_156188129.1 lipopolysaccharide biosynthesis protein [Arsenicicoccus sp. oral taxon 190] diamond 177 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Arsenicicoccus Arsenicicoccus sp. oral taxon 190

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;