RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA766854" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA766854 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8398180 8398180 PRJNA766854_P_NODE_7_length_1815_cov_22.624300_g4_i0 PRJNA766854 7 1815 22.6243 410.631045 Mammalia 40674 Chordata Chordata 937 0   NR NP_001179891.1 9913 g4 i0 96 12.0495867768595 521 20 86 1 4 1563 141 661 NP_001179891.1 ATP-dependent RNA helicase DDX3X [Bos taurus] diamond 21870 945 0.991534391534391 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
27031146 27031146 PRJNA766854_P_NODE_1122_length_396_cov_14.174387_g1000_i0 PRJNA766854 1122 396 14.174387 56.13057252 Cynocephalidae 30657 Chordata Chordata 154 1.5799999999999994e-42   NR XP_062949585.1 110931 g1000 i0 92.3 2.95454545454545 78 6 59.1 0 4 237 92 169 XP_062949585.1 ribonuclease inhibitor isoform X2 [Cynocephalus volans] diamond 1170 155 0.993548387096774 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dermoptera Cynocephalidae Cynocephalus Cynocephalus volans
29809973 29809973 PRJNA766854_P_NODE_2011_length_300_cov_16.531365_g1886_i0 PRJNA766854 2011 300 16.531365 49.594095 Cynocephalidae 30657 Chordata Chordata 154 4.4499999999999985e-43   NR XP_062949585.1 110931 g1886 i0 92.3 3.9 78 6 78 0 297 64 92 169 XP_062949585.1 ribonuclease inhibitor isoform X2 [Cynocephalus volans] diamond 1170 155 0.993548387096774 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dermoptera Cynocephalidae Cynocephalus Cynocephalus volans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;