RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA766854" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA766854 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28411361 28411361 PRJNA766854_P_NODE_1486_length_340_cov_3.890675_g1361_i0 PRJNA766854 1486 340 3.890675 13.228295 Porphyromonas gingivalis F 837 Bacteria Bacteria 86.3 7.7e-20   NR ERJ68952.1 1227271 g1361 i0 85.1 0.414705882352941 47 7 41.5 0 335 195 10 56 ERJ68952.1 hypothetical protein HMPREF1555_00132 [Porphyromonas gingivalis F0570] diamond 141 86.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis
31443632 31443632 PRJNA766854_P_NODE_2036_length_299_cov_4.225926_g1910_i0 PRJNA766854 2036 299 4.225926 12.63551874 Porphyromonas gingivalis F 837 Bacteria Bacteria 86.3 4.78e-20   NR ERJ68952.1 1227271 g1910 i0 85.1 0.471571906354515 47 7 47.2 0 294 154 10 56 ERJ68952.1 hypothetical protein HMPREF1555_00132 [Porphyromonas gingivalis F0570] diamond 141 86.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis
31854787 31854787 PRJNA766854_P_NODE_1417_length_349_cov_2.484375_g1292_i0 PRJNA766854 1417 349 2.484375 8.67046875 Muribaculaceae bacterium 2498093 Bacteria Bacteria 42 0.0433   NR MDE5941478.1 2498093 g1292 i0 73.9 0.197707736389685 23 6 19.8 0 3 71 40 62 MDE5941478.1 glucose-6-phosphate isomerase [Muribaculaceae bacterium] diamond 69 42 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae   Muribaculaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;