RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA764222" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA764222 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27685344 27685344 PRJNA764222_S_NODE_23244_length_195_cov_2.574324_g23086_i0 PRJNA764222 23244 195 2.574324 5.0199318 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 118 1.94e-30   NR GKY93333.1 2872254 g23086 i0 82.8 0.984615384615385 64 10 98.5 1 193 2 257 319 GKY93333.1 hypothetical protein MPSEU_000300900 [Mayamaea pseudoterrestris] diamond 192 118 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
30653352 30653352 PRJNA764222_S_NODE_2133_length_403_cov_2.668539_g1975_i0 PRJNA764222 2133 403 2.668539 10.75421217 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.037   NR XP_022810819.1 5861 g1975 i0 33.1 0.945409429280397 127 81 91.6 3 385 17 95 221 XP_022810819.1 PIR protein [Plasmodium yoelii] diamond 381 44.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;