contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA763718" and tax_phylum = "Pseudomonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26609787 | 26609787 | PRJNA763718_S_NODE_7901_length_157_cov_0.966667_g7693_i0 | PRJNA763718 | 7901 | 157 | 0.966667 | 1.51766719 | unclassified Pseudoalteromonas | 194690 | Bacteria | Bacteria | 111 | 5.940000000000001e-27 | NR | WP_024597516.1 | 194690 | g7693 | i0 | 98.1 | 0.993630573248408 | 52 | 1 | 99.4 | 0 | 1 | 156 | 181 | 232 | WP_024597516.1 MULTISPECIES: UvrD-helicase domain-containing protein [unclassified Pseudoalteromonas] | diamond | 156 | 111 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Alteromonadales | Pseudoalteromonadaceae | Pseudoalteromonas | |||
| 27558532 | 27558532 | PRJNA763718_S_NODE_4624_length_204_cov_1.574850_g4416_i0 | PRJNA763718 | 4624 | 204 | 1.57485 | 3.212694 | Aeromonas | 642 | Bacteria | Bacteria | 126 | 1.05e-35 | NR | WP_019444963.1 | 642 | g4416 | i0 | 100 | 0.985294117647059 | 67 | 0 | 98.5 | 0 | 203 | 3 | 23 | 89 | WP_019444963.1 MULTISPECIES: helix-turn-helix domain-containing protein [Aeromonas] | diamond | 201 | 126 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Aeromonadales | Aeromonadaceae | Aeromonas | |||
| 27748411 | 27748411 | PRJNA763718_S_NODE_7124_length_164_cov_3.039370_g6916_i0 | PRJNA763718 | 7124 | 164 | 3.03937 | 4.9845668 | Aeromonas | 642 | Bacteria | Bacteria | 105 | 9.13e-27 | NR | WP_019444962.1 | 642 | g6916 | i0 | 100 | 0.896341463414634 | 49 | 0 | 89.6 | 0 | 162 | 16 | 137 | 185 | WP_019444962.1 MULTISPECIES: ImmA/IrrE family metallo-endopeptidase [Aeromonas] | diamond | 147 | 105 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Aeromonadales | Aeromonadaceae | Aeromonas | |||
| 28537739 | 28537739 | PRJNA763718_S_NODE_5207_length_192_cov_1.787097_g4999_i0 | PRJNA763718 | 5207 | 192 | 1.787097 | 3.43122624 | Pseudomonas sp. | 306 | Bacteria | Bacteria | 41.6 | 0.0399 | NR | HLT04349.1 | 306 | g4999 | i0 | 36.2 | 0.734375 | 47 | 26 | 73.4 | 1 | 14 | 154 | 152 | 194 | HLT04349.1 class I SAM-dependent methyltransferase [Pseudomonas sp.] | diamond | 141 | 41.6 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas sp. | ||
| 28705122 | 28705122 | PRJNA763718_S_NODE_7567_length_160_cov_1.341463_g7359_i0 | PRJNA763718 | 7567 | 160 | 1.341463 | 2.1463408 | Comamonadaceae | 80864 | Bacteria | Bacteria | 87.8 | 1.37e-18 | NR | WP_010104906.1 | 1110389 | g7359 | i0 | 78.4 | 5.6625 | 51 | 11 | 95.6 | 0 | 155 | 3 | 422 | 472 | WP_010104906.1 adenosylhomocysteinase [Verminephrobacter aporrectodeae] | diamond | 906 | 88.2 | 0.99546485260771 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Verminephrobacter | Verminephrobacter aporrectodeae | ||
| 28916164 | 28916164 | PRJNA763718_S_NODE_928_length_556_cov_38.500963_g733_i0 | PRJNA763718 | 928 | 556 | 38.500963 | 214.06535428 | Enterobacter hormaechei | 158836 | Bacteria | Bacteria | 131 | 8.099999999999999e-36 | NR | WP_096179768.1 | 158836 | g733 | i0 | 94.6 | 0.60431654676259 | 112 | 6 | 60.4 | 0 | 338 | 3 | 1 | 112 | WP_096179768.1 hypothetical protein, partial [Enterobacter hormaechei] | diamond | 336 | 131 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Enterobacter | Enterobacter hormaechei | ||
| 29863638 | 29863638 | PRJNA763718_S_NODE_6671_length_169_cov_6.121212_g6463_i0 | PRJNA763718 | 6671 | 169 | 6.121212 | 10.34484828 | Neoroseomonas marina | 1232220 | Bacteria | Bacteria | 42.4 | 0.0175 | NR | WP_170056679.1 | 1232220 | g6463 | i0 | 81.8 | 5.50295857988166 | 22 | 4 | 39.1 | 0 | 97 | 162 | 151 | 172 | WP_170056679.1 RNA-directed DNA polymerase, partial [Neoroseomonas marina] | diamond | 930 | 42.4 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Acetobacterales | Acetobacteraceae | Neoroseomonas | Neoroseomonas marina | ||
| 29999797 | 29999797 | PRJNA763718_S_NODE_5711_length_183_cov_1.232877_g5503_i0 | PRJNA763718 | 5711 | 183 | 1.232877 | 2.25616491 | Pseudomonadota | 1224 | Bacteria | Bacteria | 51.2 | 1.63e-5 | NR | WP_235184783.1 | 29487 | g5503 | i0 | 48.3 | 4.85245901639344 | 58 | 27 | 95.1 | 1 | 1 | 174 | 244 | 298 | WP_235184783.1 MULTISPECIES: phage tail protein [Photorhabdus] | diamond | 888 | 51.2 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Morganellaceae | Photorhabdus | |||
| 31190265 | 31190265 | PRJNA763718_S_NODE_7255_length_163_cov_1.539683_g7047_i0 | PRJNA763718 | 7255 | 163 | 1.539683 | 2.50968329 | Aeromonas | 642 | Bacteria | Bacteria | 107 | 1.09e-27 | NR | WP_019444962.1 | 642 | g7047 | i0 | 100 | 0.975460122699387 | 53 | 0 | 97.5 | 0 | 3 | 161 | 49 | 101 | WP_019444962.1 MULTISPECIES: ImmA/IrrE family metallo-endopeptidase [Aeromonas] | diamond | 159 | 107 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Aeromonadales | Aeromonadaceae | Aeromonas | |||
| 31601967 | 31601967 | PRJNA763718_S_NODE_6696_length_169_cov_2.303030_g6488_i0 | PRJNA763718 | 6696 | 169 | 2.30303 | 3.8921207 | Aeromonas | 642 | Bacteria | Bacteria | 52.4 | 2.64e-6 | NR | WP_019444962.1 | 642 | g6488 | i0 | 96.3 | 0.479289940828402 | 27 | 1 | 47.9 | 0 | 89 | 169 | 1 | 27 | WP_019444962.1 MULTISPECIES: ImmA/IrrE family metallo-endopeptidase [Aeromonas] | diamond | 81 | 52.4 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Aeromonadales | Aeromonadaceae | Aeromonas |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;