RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA763718" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA763718 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7122914 7122914 PRJNA763718_S_NODE_4906_length_198_cov_1.372671_g4698_i0 PRJNA763718 4906 198 1.372671 2.71788858 Cloacibacterium 501783 Bacteria Bacteria 72 9.66e-13   NR MEN9487606.1 1898104 g4698 i0 55.2 6.09090909090909 67 28 98.5 1 2 196 817 883 MEN9487606.1 hypothetical protein [Bacteroidota bacterium] diamond 1206 72 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28726989 28726989 PRJNA763718_S_NODE_7587_length_160_cov_0.934959_g7379_i0 PRJNA763718 7587 160 0.934959 1.4959344 Flammeovirga yaeyamensis 367791 Bacteria Bacteria 41.6 0.00663   NR ACA05074.1 367791 g7379 i0 57.1 0.7875 42 18 78.8 0 126 1 13 54 ACA05074.1 hypothetical protein, partial [Flammeovirga yaeyamensis] diamond 126 41.6 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flammeovirgaceae Flammeovirga Flammeovirga yaeyamensis
29326763 29326763 PRJNA763718_S_NODE_3889_length_224_cov_1.465241_g3681_i0 PRJNA763718 3889 224 1.465241 3.28213984 Bacteroidia bacterium 2044936 Bacteria Bacteria 42.7 0.0299   NR MBT8260500.1 2044936 g3681 i0 40.9 0.589285714285714 44 26 58.9 0 192 61 28 71 MBT8260500.1 caspase family protein [Bacteroidia bacterium] diamond 132 42.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia       Bacteroidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;