RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA763718" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA763718 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27306199 27306199 PRJNA763718_S_NODE_8283_length_154_cov_1.136752_g8075_i0 PRJNA763718 8283 154 1.136752 1.75059808 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 53.9 2.12e-7   NR XP_637824.1 352472 g8075 i0 77.4 0.603896103896104 31 7 60.4 0 59 151 56 86 XP_637824.1 profilin II [Dictyostelium discoideum AX4] diamond 93 53.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29295288 29295288 PRJNA763718_S_NODE_8029_length_156_cov_0.983193_g7821_i0 PRJNA763718 8029 156 0.983193 1.53378108 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.9 1.14e-17   NR XP_004352947.1 1257118 g7821 i0 72.5 3.94230769230769 51 14 98.1 0 4 156 59 109 XP_004352947.1 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3), putative [Acanthamoeba castellanii str. Neff] diamond 615 80.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;