RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA763243" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA763243 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15233798 15233798 PRJNA763243_P_NODE_61312_length_243_cov_0.905882_g60966_i0 PRJNA763243 61312 243 0.905882 2.20129326 Mycoplasma sp. HU2 2108 Bacteria Bacteria 150 2.34e-41   NR WP_082160317.1 1664275 g60966 i0 100 0.987654320987654 80 0 98.8 0 2 241 378 457 WP_082160317.1 YfcC family protein [Mycoplasma sp. HU2014] diamond 240 150 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014
27274433 27274433 PRJNA763243_P_NODE_16763_length_380_cov_2.231270_g16418_i0 PRJNA763243 16763 380 2.23127 8.478826 Mycoplasma yeatsii 51365 Bacteria Bacteria 63.9 6.12e-9   NR WP_042733373.1 51365 g16418 i0 69 1.06578947368421 42 13 33.2 0 318 193 356 397 WP_042733373.1 hypothetical protein [Mycoplasma yeatsii] diamond 405 63.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii
27842713 27842713 PRJNA763243_P_NODE_66204_length_234_cov_3.527950_g65858_i0 PRJNA763243 66204 234 3.52795 8.255403 Mesomycoplasma molare 171288 Bacteria Bacteria 42.4 0.036   NR WP_036450418.1 171288 g65858 i0 36.1 0.782051282051282 61 39 78.2 0 185 3 147 207 WP_036450418.1 DUF4116 domain-containing protein, partial [Mesomycoplasma molare] diamond 183 42.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma molare
31190237 31190237 PRJNA763243_P_NODE_51675_length_251_cov_1.460674_g51329_i0 PRJNA763243 51675 251 1.460674 3.66629174 Mycoplasma sp. HU2 2108 Bacteria Bacteria 146 1.01e-39   NR WP_050517193.1 1664275 g51329 i0 91.6 0.99203187250996006 83 7 99.2 0 3 251 181 263 WP_050517193.1 P68 family surface lipoprotein, partial [Mycoplasma sp. HU2014] diamond 249 146 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. HU2014

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;