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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA763243" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA763243 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26989646 26989646 PRJNA763243_P_NODE_26622_length_315_cov_4.078512_g26276_i0 PRJNA763243 26622 315 4.078512 12.8473128 Lerista edwardsae 470340 Chordata Chordata 92.4 3.22e-19   NR KAJ6662511.1 470340 g26276 i0 48.4 2.65714285714286 93 35 88.6 1 7 285 639 718 KAJ6662511.1 hypothetical protein lerEdw1_011647 [Lerista edwardsae] diamond 837 92.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Lerista Lerista edwardsae
27179416 27179416 PRJNA763243_P_NODE_66942_length_231_cov_36.721519_g66596_i0 PRJNA763243 66942 231 36.721519 84.82670889 Bos taurus 9913 Chordata Chordata 109 7.77e-26   NR DAA17736.1 9913 g66596 i0 98 0.662337662337662 51 1 66.2 0 229 77 77 127 DAA17736.1 TPA: ribosomal protein L35-like [Bos taurus] diamond 153 109 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
27315851 27315851 PRJNA763243_P_NODE_50183_length_254_cov_1.408840_g49837_i0 PRJNA763243 50183 254 1.40884 3.5784536 Opisthokonta 33154 Chordata Chordata 114 3.8800000000000006e-27   NR PIO38392.1 8400 g49837 i0 68.3 83.2913385826772 82 25 96.9 1 4 249 602 682 PIO38392.1 hypothetical protein AB205_0016370, partial [Aquarana catesbeiana] diamond 21156 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
27600106 27600106 PRJNA763243_P_NODE_57904_length_246_cov_0.838150_g57558_i0 PRJNA763243 57904 246 0.83815 2.061849 Chordata 7711 Chordata Chordata 51.6 2.96e-5   NR XP_069504454.1 8296 g57558 i0 64.5 8.53658536585366 31 11 37.8 0 153 245 430 460 XP_069504454.1 cubilin [Ambystoma mexicanum] diamond 2100 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
29169136 29169136 PRJNA763243_P_NODE_62769_length_242_cov_0.881657_g62423_i0 PRJNA763243 62769 242 0.881657 2.13360994 Platysternon megacephalum 55544 Chordata Chordata 42.4 0.0485   NR TFK13276.1 55544 g62423 i0 47.5 0.495867768595041 40 21 49.6 0 50 169 67 106 TFK13276.1 Pre-mRNA-splicing factor syf2 [Platysternon megacephalum] diamond 120 42.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Platysternidae Platysternon Platysternon megacephalum
29273152 29273152 PRJNA763243_P_NODE_47529_length_259_cov_3.301075_g47183_i0 PRJNA763243 47529 259 3.301075 8.54978425 root 1 Root_unresolved Root_unresolved 44.7 0.00974   NR XP_038636667.1 7830 g47183 i0 39.7 3.45173745173745 73 40 79.9 2 26 232 317 389 XP_038636667.1 LOW QUALITY PROTEIN: leucine-rich repeat-containing G-protein coupled receptor 5-like [Scyliorhinus canicula] diamond 894 45.1 0.991130820399113 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
30337957 30337957 PRJNA763243_P_NODE_13512_length_416_cov_1.588921_g13167_i0 PRJNA763243 13512 416 1.588921 6.60991136 Oikopleura dioica 34765 Chordata Chordata 52 1.51e-4   NR CAG5110089.1 34765 g13167 i0 30.7 1.74519230769231 101 59 64.9 2 379 110 1876 1976 CAG5110089.1 Oidioi.mRNA.OKI2018_I69.chr2.g4529.t1.cds [Oikopleura dioica] diamond 726 52 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
30621769 30621769 PRJNA763243_P_NODE_69073_length_225_cov_5.335526_g68727_i0 PRJNA763243 69073 225 5.335526 12.0049335 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 48.5 1.63e-4   NR CAI9151001.1 3082113 g68727 i0 67.2 0.853333333333333 64 18 85.3 2 198 7 128 188 CAI9151001.1 unnamed protein product, partial [Rangifer tarandus platyrhynchus] diamond 192 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
30716580 30716580 PRJNA763243_P_NODE_62694_length_242_cov_0.911243_g62348_i0 PRJNA763243 62694 242 0.911243 2.20520806 Amazona aestiva 12930 Chordata Chordata 57.8 1.88e-7   NR KQK77842.1 12930 g62348 i0 36.9 2.9504132231405 84 43 94.2 2 4 231 791 872 KQK77842.1 hypothetical protein AAES_121245 [Amazona aestiva] diamond 714 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Amazona Amazona aestiva
30758000 30758000 PRJNA763243_P_NODE_60454_length_243_cov_6.347059_g60108_i0 PRJNA763243 60454 243 6.347059 15.42335337 root 1 Root_unresolved Root_unresolved 84 1.97e-18   NR XP_058160539.1 9361 g60108 i0 61.6 20.7283950617284 73 24 87.7 2 29 241 1 71 XP_058160539.1 large ribosomal subunit protein eL22 isoform X1 [Dasypus novemcinctus] diamond 5037 84.7 0.991735537190083 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
30938006 30938006 PRJNA763243_P_NODE_70274_length_219_cov_4.726027_g69928_i0 PRJNA763243 70274 219 4.726027 10.34999913 Mycteria americana 33587 Chordata Chordata 48.5 2.33e-4   NR KAK4806618.1 33587 g69928 i0 50 0.63013698630137 46 23 63 0 10 147 237 282 KAK4806618.1 hypothetical protein QYF61_013873 [Mycteria americana] diamond 138 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
31263544 31263544 PRJNA763243_P_NODE_25075_length_323_cov_1.824000_g24729_i0 PRJNA763243 25075 323 1.824 5.89152 Metazoa 33208 Chordata Chordata 60.8 4.15e-8   NR XP_003430926.2 9258 g24729 i0 38.1 2.62848297213622 105 60 95.7 2 314 6 59 160 XP_003430926.2 LOW QUALITY PROTEIN: 2-5A-dependent ribonuclease [Ornithorhynchus anatinus] diamond 849 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
31918088 31918088 PRJNA763243_P_NODE_34077_length_293_cov_3.436364_g33731_i0 PRJNA763243 34077 293 3.436364 10.06854652 Gekko japonicus 146911 Chordata Chordata 83.2 4.08e-16   NR XP_015284848.1 146911 g33731 i0 66.7 1.1877133105802 57 19 58.4 0 288 118 53 109 XP_015284848.1 PREDICTED: thioredoxin reductase 3 isoform X1 [Gekko japonicus] diamond 348 83.2 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
32013044 32013044 PRJNA763243_P_NODE_61718_length_242_cov_3.029586_g61372_i0 PRJNA763243 61718 242 3.029586 7.33159812 Gallus gallus 9031 Chordata Chordata 53.9 4.11e-6   NR XP_040561930.1 9031 g61372 i0 61 0.508264462809917 41 16 50.8 0 117 239 249 289 XP_040561930.1 extensin-like [Gallus gallus] diamond 123 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
32307771 32307771 PRJNA763243_P_NODE_64719_length_239_cov_2.234940_g64373_i0 PRJNA763243 64719 239 2.23494 5.3415066 Opisthokonta 33154 Chordata Chordata 110 1.35e-27   NR CAH1273146.1 7740 g64373 i0 69.9 13.7824267782427 73 22 91.6 0 234 16 195 267 CAH1273146.1 RPS2 [Branchiostoma lanceolatum] diamond 3294 110 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
32329755 32329755 PRJNA763243_P_NODE_48719_length_257_cov_1.413043_g48373_i0 PRJNA763243 48719 257 1.413043 3.63152051 Carcharodon carcharias 13397 Chordata Chordata 63.9 1.25e-9   NR XP_041031146.1 13397 g48373 i0 44.2 0.898832684824903 77 36 89.9 1 239 9 22 91 XP_041031146.1 pro-cathepsin H [Carcharodon carcharias] diamond 231 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;