RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA763243" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA763243 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27021585 27021585 PRJNA763243_P_NODE_66802_length_232_cov_3.377358_g66456_i0 PRJNA763243 66802 232 3.377358 7.83547056 Desulfurellales bacterium 2482794 Bacteria Bacteria 53.5 4.14e-6   NR TXH54326.1 2482794 g66456 i0 48.3 1.51293103448276 58 30 75 0 48 221 174 231 TXH54326.1 MAG: hypothetical protein E6Q97_11250 [Desulfurellales bacterium] diamond 351 53.5 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
27084836 27084836 PRJNA763243_P_NODE_59362_length_244_cov_2.087719_g59016_i0 PRJNA763243 59362 244 2.087719 5.09403436 Sulfurimonas sp. 2022749 Bacteria Bacteria 42.4 0.0383   NR MDQ7043078.1 2022749 g59016 i0 44.9 0.602459016393443 49 24 56.6 1 100 237 63 111 MDQ7043078.1 hypothetical protein [Sulfurimonas sp.] diamond 147 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp.
28127159 28127159 PRJNA763243_P_NODE_66725_length_232_cov_7.911950_g66379_i0 PRJNA763243 66725 232 7.91195 18.355724 Sulfurimonadaceae bacterium 2771476 Bacteria Bacteria 48.5 1.82e-4   NR MCW8838973.1 2771476 g66379 i0 44.6 0.724137931034483 56 30 71.1 1 65 229 2 57 MCW8838973.1 hypothetical protein [Sulfurimonadaceae bacterium] diamond 168 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae   Sulfurimonadaceae bacterium
28632426 28632426 PRJNA763243_P_NODE_30987_length_305_cov_5.086207_g30641_i0 PRJNA763243 30987 305 5.086207 15.51293135 Helicobacter pylori 210 Bacteria Bacteria 103 1.04e-25   NR GAA8854299.1 210 g30641 i0 96 0.491803278688525 50 2 49.2 0 1 150 35 84 GAA8854299.1 hypothetical protein DUHN55_46680 [Helicobacter pylori] diamond 150 103 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30242857 30242857 PRJNA763243_P_NODE_55792_length_247_cov_3.718391_g55446_i0 PRJNA763243 55792 247 3.718391 9.18442577 Helicobacter pylori 210 Bacteria Bacteria 52 1.3e-6   NR GAA9176533.1 210 g55446 i0 55.4 0.680161943319838 56 24 68 1 10 177 1 55 GAA9176533.1 hypothetical protein Kyoto193A_0850 [Helicobacter pylori] diamond 168 52 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;