RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA763243" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

bioproject 1

  • PRJNA763243 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29326760 29326760 PRJNA763243_P_NODE_8149_length_515_cov_2.871041_g7808_i0 PRJNA763243 8149 515 2.871041 14.78586115 Methanobrevibacter sp. 66852 Archaea Archaea 59.3 1.07e-6   NR WP_292800363.1 66852 g7808 i0 48.9 0.547572815533981 47 24 27.4 0 24 164 942 988 WP_292800363.1 hypothetical protein [Methanobrevibacter sp.] diamond 282 59.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30432678 30432678 PRJNA763243_P_NODE_43813_length_267_cov_43.788660_g43467_i0 PRJNA763243 43813 267 43.78866 116.9157222 Methanosarcina sp. 2213 Archaea Archaea 53.5 5.62e-6   NR HET8686942.1 2213 g43467 i0 56.3 0.539325842696629 48 20 53.9 1 247 104 58 104 HET8686942.1 portal protein [Methanosarcina sp.] diamond 144 53.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
30979257 30979257 PRJNA763243_P_NODE_20174_length_352_cov_4.161290_g19828_i0 PRJNA763243 20174 352 4.16129 14.6477408 root 1 Root_unresolved Root_unresolved 55.8 1.28e-6   NR MFA5398780.1 2196 g19828 i0 40 2.59943181818182 60 33 51.1 1 348 169 34 90 MFA5398780.1 6-carboxytetrahydropterin synthase [Methanogenium sp.] diamond 915 56.2 0.99288256227758 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanogenium Methanogenium sp.
32519533 32519533 PRJNA763243_P_NODE_56499_length_247_cov_0.885057_g56153_i0 PRJNA763243 56499 247 0.885057 2.18609079 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 83.6 1.67e-16   NR MDP6900288.1 2670411 g56153 i0 61.6 4.4331983805668 73 26 86.2 2 243 31 501 573 MDP6900288.1 AAA domain-containing protein [Candidatus Thalassarchaeaceae archaeon] diamond 1095 83.6 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;