RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA763243" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA763243 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12223436 12223436 PRJNA763243_P_NODE_60590_length_243_cov_2.341176_g60244_i0 PRJNA763243 60590 243 2.341176 5.68905768 Leptotrichia massiliensis 1852388 Bacteria Bacteria 147 6.23e-39   NR WP_071124619.1 1852388 g60244 i0 94.9 0.962962962962963 78 4 96.3 0 4 237 334 411 WP_071124619.1 autotransporter-associated N-terminal domain-containing protein [Leptotrichia massiliensis] diamond 234 147 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia massiliensis
29610687 29610687 PRJNA763243_P_NODE_37450_length_283_cov_6.209524_g37104_i0 PRJNA763243 37450 283 6.209524 17.57295292 Leptotrichia sp. oral taxon 215 712359 Bacteria Bacteria 182 1.4899999999999999e-53   NR WP_232219693.1 712359 g37104 i0 97.8 0.985865724381625 93 2 98.6 0 281 3 229 321 WP_232219693.1 amidohydrolase [Leptotrichia sp. oral taxon 215] diamond 279 182 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 215

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;