RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA760976" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA760976 · 23 ✖

analysis 1

  • diamond · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23695401 23695401 PRJNA760976_P_NODE_9759_length_454_cov_0.994751_g9440_i0 PRJNA760976 9759 454 0.994751 4.51616954 Branchiostoma belcheri 7741 Chordata Chordata 146 1.49e-38   NR XP_019618263.1 7741 g9440 i0 53.1 2.65638766519824 128 56 84.6 1 69 452 318 441 XP_019618263.1 PREDICTED: protein disulfide-isomerase A3-like [Branchiostoma belcheri] diamond 1206 146 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
26895130 26895130 PRJNA760976_P_NODE_36021_length_283_cov_0.990476_g35700_i0 PRJNA760976 36021 283 0.990476 2.80304708 Microtus ochrogaster 79684 Chordata Chordata 81.6 1.31e-15   NR KAH0516971.1 79684 g35700 i0 46.5 1.04946996466431 99 46 99.6 3 1 282 927 1023 KAH0516971.1 Protein inturned [Microtus ochrogaster] diamond 297 81.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
27053219 27053219 PRJNA760976_P_NODE_33762_length_290_cov_0.981567_g33441_i0 PRJNA760976 33762 290 0.981567 2.8465443 Bufo bufo 8384 Chordata Chordata 61.2 7.65e-10   NR XP_040261850.1 8384 g33441 i0 32.1 0.837931034482759 81 55 83.8 0 46 288 1 81 XP_040261850.1 selenoprotein W [Bufo bufo] diamond 243 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
27157271 27157271 PRJNA760976_P_NODE_17302_length_367_cov_1.030612_g16981_i0 PRJNA760976 17302 367 1.030612 3.78234604 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 139 6.73e-39   NR XP_067960906.1 7769 g16981 i0 58.2 24.6948228882834 122 50 99.7 1 367 2 14 134 XP_067960906.1 small ribosomal subunit protein eS8 [Myxine glutinosa] diamond 9063 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28136811 28136811 PRJNA760976_P_NODE_49865_length_248_cov_0.862857_g49544_i0 PRJNA760976 49865 248 0.862857 2.13988536 Passeriformes 9126 Chordata Chordata 65.5 2.77e-10   NR NXE92262.1 47692 g49544 i0 53.7 16.5 54 25 65.3 0 246 85 25 78 NXE92262.1 RDHE2 dehydrogenase [Menura novaehollandiae] diamond 4092 65.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Menuridae Menura Menura novaehollandiae
29705273 29705273 PRJNA760976_P_NODE_54010_length_243_cov_0.905882_g53689_i0 PRJNA760976 54010 243 0.905882 2.20129326 Crypturellus soui 458187 Chordata Chordata 55.8 4.84e-7   NR NWI21827.1 458187 g53689 i0 41.9 0.91358024691358 74 42 91.4 1 3 224 144 216 NWI21827.1 NARE ribosyltransferase [Crypturellus soui] diamond 222 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Tinamiformes Tinamidae Crypturellus Crypturellus soui
29778437 29778437 PRJNA760976_P_NODE_52651_length_244_cov_1.350877_g52330_i0 PRJNA760976 52651 244 1.350877 3.29613988 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.9 1.41e-15   NR KAG6926061.1 8475 g52330 i0 52.9 26.7172131147541 68 32 83.6 0 238 35 470 537 KAG6926061.1 amine oxidase, copper containing 1 [Chelydra serpentina] diamond 6519 80.9 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Chelydridae Chelydra Chelydra serpentina
29904993 29904993 PRJNA760976_P_NODE_31371_length_297_cov_1.986607_g31050_i0 PRJNA760976 31371 297 1.986607 5.90022279 root 1 Root_unresolved Root_unresolved 114 4.44e-30   NR XP_035699884.1 7739 g31050 i0 70.7 9.94949494949495 82 24 82.8 0 52 297 2 83 XP_035699884.1 40S ribosomal protein S12 [Branchiostoma floridae] diamond 2955 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30369562 30369562 PRJNA760976_P_NODE_52912_length_244_cov_0.894737_g52591_i0 PRJNA760976 52912 244 0.894737 2.18315828 Apodemus speciosus 105296 Chordata Chordata 53.9 1.47e-7   NR GAB1303385.1 105296 g52591 i0 60.5 0.959016393442623 38 15 46.7 0 228 115 19 56 GAB1303385.1 hypothetical protein APTSU1_001863100 [Apodemus speciosus] diamond 234 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
30495603 30495603 PRJNA760976_P_NODE_43053_length_263_cov_1.584211_g42732_i0 PRJNA760976 43053 263 1.584211 4.16647493 Branchiostoma lanceolatum 7740 Chordata Chordata 45.4 0.00521   NR CAH1244312.1 7740 g42732 i0 47.6 3.18250950570342 42 22 47.9 0 109 234 245 286 CAH1244312.1 DAW1 [Branchiostoma lanceolatum] diamond 837 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
30590164 30590164 PRJNA760976_P_NODE_15433_length_382_cov_1.339806_g15112_i0 PRJNA760976 15433 382 1.339806 5.11805892 Pelodiscus sinensis 13735 Chordata Chordata 44.3 0.0461   NR XP_014434391.2 13735 g15112 i0 35.8 1.24869109947644 53 34 41.6 0 74 232 180 232 XP_014434391.2 uncharacterized protein C11orf16 homolog isoform X4 [Pelodiscus sinensis] diamond 477 44.3 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
30631366 30631366 PRJNA760976_P_NODE_51613_length_245_cov_1.750000_g51292_i0 PRJNA760976 51613 245 1.75 4.2875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 98.6 4.06e-22   NR XP_067964356.1 7769 g51292 i0 65.8 10.8367346938776 73 25 89.4 0 24 242 82 154 XP_067964356.1 ornithine decarboxylase-like isoform X2 [Myxine glutinosa] diamond 2655 98.6 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
30631367 30631367 PRJNA760976_P_NODE_54793_length_242_cov_1.721893_g54472_i0 PRJNA760976 54793 242 1.721893 4.16698106 Metazoa 33208 Chordata Chordata 53.5 5.89e-6   NR XP_058686275.1 48891 g54472 i0 37.7 11.3181818181818 77 45 91.7 1 224 3 387 463 XP_058686275.1 macrophage mannose receptor 1-like [Poecile atricapillus] diamond 2739 53.9 0.992578849721707 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Paridae Poecile Poecile atricapillus
30716515 30716515 PRJNA760976_P_NODE_44914_length_258_cov_2.324324_g44593_i0 PRJNA760976 44914 258 2.324324 5.99675592 Bombina bombina 8345 Chordata Chordata 50.4 8.38e-5   NR XP_053561527.1 8345 g44593 i0 36.1 0.965116279069767 83 44 96.5 2 5 253 354 427 XP_053561527.1 rac GTPase-activating protein 1 [Bombina bombina] diamond 249 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
31032876 31032876 PRJNA760976_P_NODE_54375_length_243_cov_0.870588_g54054_i0 PRJNA760976 54375 243 0.870588 2.11552884 Tachyglossus aculeatus 9261 Chordata Chordata 73.6 5.21e-13   NR XP_038627859.1 9261 g54054 i0 50 1.97530864197531 80 35 98.8 1 242 3 664 738 XP_038627859.1 xanthine dehydrogenase/oxidase-like [Tachyglossus aculeatus] diamond 480 73.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
31064412 31064412 PRJNA760976_P_NODE_26395_length_316_cov_3.057613_g26074_i0 PRJNA760976 26395 316 3.057613 9.66205708 Clavelina lepadiformis 159417 Chordata Chordata 97.1 7.8e-21   NR CAK8689709.1 159417 g26074 i0 59.6 0.987341772151899 104 42 98.7 0 315 4 664 767 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 312 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
31064413 31064413 PRJNA760976_P_NODE_31395_length_297_cov_1.883929_g31074_i0 PRJNA760976 31395 297 1.883929 5.59526913 Branchiostoma lanceolatum 7740 Chordata Chordata 120 3.1199999999999997e-31   NR CAH1233360.1 7740 g31074 i0 62.8 4.31313131313131 86 32 86.9 0 37 294 154 239 CAH1233360.1 HSD17B8 [Branchiostoma lanceolatum] diamond 1281 120 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
31105332 31105332 PRJNA760976_P_NODE_41775_length_266_cov_2.844560_g41454_i0 PRJNA760976 41775 266 2.84456 7.5665296 Squamata 8509 Chordata Chordata 43.9 0.02   NR XP_015274526.1 146911 g41454 i0 35 2.90977443609023 60 36 67.7 2 192 13 1434 1490 XP_015274526.1 PREDICTED: LOW QUALITY PROTEIN: multiple epidermal growth factor-like domains protein 8, partial [Gekko japonicus] diamond 774 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
31199828 31199828 PRJNA760976_P_NODE_30175_length_302_cov_0.986900_g29854_i0 PRJNA760976 30175 302 0.9869 2.980438 Metazoa 33208 Chordata Chordata 109 1.67e-28   NR AAN52380.1 7741 g29854 i0 70.2 15.6059602649007 84 25 83.4 0 45 296 1 84 AAN52380.1 ribosomal protein L35 [Branchiostoma belcheri] diamond 4713 109 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
31421636 31421636 PRJNA760976_P_NODE_53276_length_244_cov_0.865497_g52955_i0 PRJNA760976 53276 244 0.865497 2.11181268 Chordata 7711 Chordata Chordata 62.4 4.53e-9   NR KAK4815109.1 33587 g52955 i0 41.7 27.1598360655738 72 31 79.9 2 195 1 292 359 KAK4815109.1 hypothetical protein QYF61_015592 [Mycteria americana] diamond 6627 62.8 0.993630573248408 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
31927712 31927712 PRJNA760976_P_NODE_34857_length_286_cov_1.483568_g34536_i0 PRJNA760976 34857 286 1.483568 4.24300448 root 1 Root_unresolved Root_unresolved 147 1.1e-42   NR EFB25891.1 9646 g34536 i0 85.2 92.013986013986 88 13 92.3 0 265 2 30 117 EFB25891.1 hypothetical protein PANDA_004337, partial [Ailuropoda melanoleuca] diamond 26316 147 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ailuropoda Ailuropoda melanoleuca
32212596 32212596 PRJNA760976_P_NODE_56918_length_241_cov_0.869048_g56597_i0 PRJNA760976 56918 241 0.869048 2.09440568 Opisthokonta 33154 Chordata Chordata 57.8 1.83e-7   NR XP_056422133.1 327740 g56597 i0 43.9 7.20746887966805 66 36 80.9 1 5 199 399 464 XP_056422133.1 F-box/LRR-repeat protein 4 isoform X2 [Hyla sarda] diamond 1737 58.2 0.993127147766323 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
32875425 32875425 PRJNA760976_P_NODE_55300_length_242_cov_0.887574_g54979_i0 PRJNA760976 55300 242 0.887574 2.14792908 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 120 7.859999999999998e-32   NR CBY12761.1 34765 g54979 i0 69.2 25.7107438016529 78 24 96.7 0 235 2 79 156 CBY12761.1 unnamed protein product [Oikopleura dioica] diamond 6222 121 0.991735537190083 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;