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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA760976" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA760976 · 19 ✖

analysis 1

  • diamond · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26799891 26799891 PRJNA760976_P_NODE_15361_length_383_cov_0.983871_g15040_i0 PRJNA760976 15361 383 0.983871 3.76822593 Actinobacteria bacterium RBG_19FT_COMBO_36_27 1797206 Bacteria Bacteria 160 7.32e-43   NR OFW63940.1 1797206 g15040 i0 62.2 3.97911227154047 127 48 99.5 0 3 383 121 247 OFW63940.1 MAG: pyruvate, phosphate dikinase, partial [Actinobacteria bacterium RBG_19FT_COMBO_36_27] diamond 1524 160 1 Bacteria   Bacillati Actinomycetota         Actinobacteria bacterium RBG_19FT_COMBO_36_27
26863612 26863612 PRJNA760976_P_NODE_14401_length_392_cov_0.905956_g14081_i0 PRJNA760976 14401 392 0.905956 3.55134752 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 82 3.31e-15   NR HEV3352619.1 2201156 g14081 i0 43.2 2.7015306122449 118 63 90.3 4 391 38 222 335 HEV3352619.1 Ig-like domain repeat protein [Acidimicrobiales bacterium] diamond 1059 82 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
27021523 27021523 PRJNA760976_P_NODE_34702_length_287_cov_1.037383_g34381_i0 PRJNA760976 34702 287 1.037383 2.97728921 Actinokineospora inagensis 103730 Bacteria Bacteria 48.9 4.51e-4   NR WP_026423909.1 103730 g34381 i0 38.4 1.79790940766551 86 49 87.8 2 15 266 1662 1745 WP_026423909.1 CARDB domain-containing protein [Actinokineospora inagensis] diamond 516 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora inagensis
27600099 27600099 PRJNA760976_P_NODE_56644_length_241_cov_0.880952_g56323_i0 PRJNA760976 56644 241 0.880952 2.12309432 root 1 Root_unresolved Root_unresolved 43.9 0.0136   NR WP_103493233.1 1883 g56323 i0 36.1 6.33609958506224 72 43 89.6 1 237 22 233 301 WP_103493233.1 MULTISPECIES: STM4015 family protein [Streptomyces] diamond 1527 44.3 0.99097065462754 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
27947281 27947281 PRJNA760976_P_NODE_57645_length_230_cov_2.878981_g57324_i0 PRJNA760976 57645 230 2.878981 6.6216563 Mycolicibacterium 1866885 Bacteria Bacteria 154 1.6499999999999998e-42   NR WP_412098625.1 912594 g57324 i0 93.4 2.97391304347826 76 5 99.1 0 2 229 187 262 WP_412098625.1 IS21 family transposase [Mycolicibacterium iranicum] diamond 684 155 0.993548387096774 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium iranicum
29137627 29137627 PRJNA760976_P_NODE_48629_length_250_cov_0.870056_g48308_i0 PRJNA760976 48629 250 0.870056 2.17514 Lawsonella clevelandensis 1528099 Bacteria Bacteria 89 6.86e-19   NR PZP88766.1 1528099 g48308 i0 100 0.48 40 0 48 0 3 122 286 325 PZP88766.1 MAG: hypothetical protein DI579_05235 [Lawsonella clevelandensis] diamond 120 89 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
29610652 29610652 PRJNA760976_P_NODE_17930_length_362_cov_1.342561_g17609_i0 PRJNA760976 17930 362 1.342561 4.86007082 Rubrobacter sp. 2036010 Bacteria Bacteria 61.2 5.3e-9   NR HZB10785.1 2036010 g17609 i0 36.7 0.74585635359116 90 56 74.6 1 87 356 14 102 HZB10785.1 DUF1772 domain-containing protein [Rubrobacter sp.] diamond 270 61.2 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
29936547 29936547 PRJNA760976_P_NODE_57331_length_235_cov_2.265432_g57010_i0 PRJNA760976 57331 235 2.265432 5.3237652 PVC group 1783257 Bacteria Bacteria 59.3 4.72e-8   NR MCW2548333.1 1785 g57010 i0 65.9 8.02978723404255 44 15 56.2 0 135 4 51 94 MCW2548333.1 hypothetical protein [Mycobacterium sp.] diamond 1887 59.7 0.993299832495812 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
30653272 30653272 PRJNA760976_P_NODE_32753_length_293_cov_1.209091_g32432_i0 PRJNA760976 32753 293 1.209091 3.54263663 Nocardioides sp. 35761 Bacteria Bacteria 129 4.5600000000000005e-33   NR MCD6641075.1 35761 g32432 i0 67 7.94539249146758 97 32 99.3 0 292 2 367 463 MCD6641075.1 NAD-dependent succinate-semialdehyde dehydrogenase [Nocardioides sp.] diamond 2328 129 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp.
30906402 30906402 PRJNA760976_P_NODE_44094_length_260_cov_2.401070_g43773_i0 PRJNA760976 44094 260 2.40107 6.242782 Dactylosporangium sp. NPDC 60453 Bacteria Bacteria 50.8 6.36e-5   NR WP_354786846.1 3154889 g43773 i0 38.2 0.784615384615385 68 41 77.3 1 249 49 472 539 WP_354786846.1 cellulose binding domain-containing protein [Dactylosporangium sp. NPDC005555] diamond 204 50.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Dactylosporangium Dactylosporangium sp. NPDC005555
31221940 31221940 PRJNA760976_P_NODE_17315_length_367_cov_0.982993_g16994_i0 PRJNA760976 17315 367 0.982993 3.60758431 Actinomycetota bacterium 2900548 Bacteria Bacteria 52 7.73e-5   NR MDQ3151283.1 2900548 g16994 i0 65 0.326975476839237 40 13 32.7 1 2 121 264 302 MDQ3151283.1 matrilysin family metalloendoprotease [Actinomycetota bacterium] diamond 120 52 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31317060 31317060 PRJNA760976_P_NODE_42855_length_264_cov_1.172775_g42534_i0 PRJNA760976 42855 264 1.172775 3.096126 Streptomyces murinus 33900 Bacteria Bacteria 92 2.23e-19   NR WP_199571634.1 33900 g42534 i0 51.7 4.92045454545455 87 42 98.9 0 262 2 926 1012 WP_199571634.1 hypothetical protein [Streptomyces murinus] diamond 1299 92 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces murinus
31411991 31411991 PRJNA760976_P_NODE_24656_length_324_cov_1.521912_g24335_i0 PRJNA760976 24656 324 1.521912 4.93099488 Actinomycetota bacterium 2900548 Bacteria Bacteria 66.2 5.16e-10   NR MEY3505807.1 2900548 g24335 i0 46.3 1.47222222222222 82 43 75.9 1 1 246 163 243 MEY3505807.1 hypothetical protein [Actinomycetota bacterium] diamond 477 66.2 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31453423 31453423 PRJNA760976_P_NODE_7736_length_496_cov_1.300236_g7417_i0 PRJNA760976 7736 496 1.300236 6.44917056 Bacteria 2 Bacteria Bacteria 88.2 1.42e-18   NR GMV20487.1 2080302 g7417 i0 49.5 4.28225806451613 103 50 61.1 1 11 313 64 166 GMV20487.1 MAG: osteoblast specific factor 2-related protein [Acidimicrobiia bacterium] diamond 2124 88.6 0.99548532731377 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
31475326 31475326 PRJNA760976_P_NODE_30436_length_301_cov_1.013158_g30115_i0 PRJNA760976 30436 301 1.013158 3.04960558 Actinomycetota bacterium 2900548 Bacteria Bacteria 160 1.3899999999999998e-48   NR MBS1889789.1 2900548 g30115 i0 78 0.996677740863787 100 21 99.7 1 1 300 23 121 MBS1889789.1 hypothetical protein [Actinomycetota bacterium] diamond 300 160 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31601900 31601900 PRJNA760976_P_NODE_56816_length_241_cov_0.875000_g56495_i0 PRJNA760976 56816 241 0.875 2.10875 Corynebacterium sp. ED61 2211360 Bacteria Bacteria 150 3.6399999999999997e-40   NR WP_194187701.1 2211360 g56495 i0 95 0.995850622406639 80 4 99.6 0 2 241 105 184 WP_194187701.1 MobF family relaxase [Corynebacterium sp. ED61] diamond 240 150 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. ED61
31981200 31981200 PRJNA760976_P_NODE_18238_length_360_cov_1.296167_g17917_i0 PRJNA760976 18238 360 1.296167 4.6662012 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 61.6 2.27e-8   NR MDW3177977.1 2080302 g17917 i0 33.6 1.06666666666667 128 75 100 5 360 1 133 258 MDW3177977.1 hypothetical protein [Acidimicrobiia bacterium] diamond 384 61.6 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32234776 32234776 PRJNA760976_P_NODE_44898_length_258_cov_2.443243_g44577_i0 PRJNA760976 44898 258 2.443243 6.30356694 Yaniella sp. 2773929 Bacteria Bacteria 103 8.42e-25   NR HEY4576576.1 2773929 g44577 i0 98 0.581395348837209 50 1 58.1 0 2 151 201 250 HEY4576576.1 hypothetical protein [Yaniella sp.] diamond 150 103 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Yaniella Yaniella sp.
32361276 32361276 PRJNA760976_P_NODE_38719_length_275_cov_1.465347_g38398_i0 PRJNA760976 38719 275 1.465347 4.02970425 Kribbella sp. NPDC 1871183 Bacteria Bacteria 95.9 1.2500000000000001e-22   NR WP_355464220.1 3156893 g38398 i0 50.5 1.94181818181818 91 45 99.3 0 2 274 81 171 WP_355464220.1 hemerythrin domain-containing protein [Kribbella sp. NPDC005582] diamond 534 95.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. NPDC005582

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;