RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA760976" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA760976 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28411277 28411277 PRJNA760976_P_NODE_35646_length_284_cov_1.071090_g35325_i0 PRJNA760976 35646 284 1.07109 3.0418956 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 113 5.59e-27   NR XP_013759182.1 461836 g35325 i0 56.5 0.971830985915493 92 38 97.2 1 8 283 288 377 XP_013759182.1 peptidase S8 and S53 domain-containing protein [Thecamonas trahens ATCC 50062] diamond 276 113 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30210896 30210896 PRJNA760976_P_NODE_21812_length_338_cov_3.120755_g21491_i0 PRJNA760976 21812 338 3.120755 10.5481519 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 63.9 4.25e-10   NR XP_013758370.1 461836 g21491 i0 38.1 0.86094674556213 97 56 85.2 2 314 27 9 102 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 291 63.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30379140 30379140 PRJNA760976_P_NODE_27692_length_311_cov_1.567227_g27371_i0 PRJNA760976 27692 311 1.567227 4.87407597 root 1 Root_unresolved Root_unresolved 143 4.489999999999999e-37   NR XP_013754784.1 461836 g27371 i0 66 31.8327974276527 103 35 99.4 0 309 1 494 596 XP_013754784.1 major vault protein [Thecamonas trahens ATCC 50062] diamond 9900 143 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;