RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA758770" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA758770 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17782412 17782412 PRJNA758770_S_NODE_32114_length_243_cov_0.870588_g31988_i0 PRJNA758770 32114 243 0.870588 2.11552884 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 109 1.76e-28   NR CEO96284.1 37360 g31988 i0 61.3 1.97530864197531 80 31 98.8 0 3 242 1 80 CEO96284.1 hypothetical protein PBRA_004955 [Plasmodiophora brassicae] diamond 480 109 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27116096 27116096 PRJNA758770_S_NODE_29922_length_245_cov_0.906977_g29796_i0 PRJNA758770 29922 245 0.906977 2.22209365 Babesia microti strain RI 1133968 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0374   NR XP_012647323.1 1133968 g29796 i0 30.1 1.01632653061224 83 46 86.9 4 24 236 258 340 XP_012647323.1 hypothetical protein BMR1_01G01240 [Babesia microti strain RI] diamond 249 42.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti
29042781 29042781 PRJNA758770_S_NODE_24368_length_252_cov_0.871508_g24242_i0 PRJNA758770 24368 252 0.871508 2.19620016 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 48.1 5.06e-4   NR KAF0686689.1 120398 g24242 i0 32.9 1.01190476190476 85 42 97.6 3 250 5 412 484 KAF0686689.1 hypothetical protein As57867_021462 [Aphanomyces stellatus] diamond 255 48.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
30084554 30084554 PRJNA758770_S_NODE_24472_length_252_cov_0.871508_g24346_i0 PRJNA758770 24472 252 0.871508 2.19620016 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 75.1 1.47e-13   NR KAF1335299.1 82926 g24346 i0 47 0.988095238095238 83 43 97.6 1 247 2 49 131 KAF1335299.1 Glutathione s-transferase, partial [Globisporangium splendens] diamond 249 75.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;