RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA758770" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA758770 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28063744 28063744 PRJNA758770_S_NODE_30885_length_244_cov_0.912281_g30759_i0 PRJNA758770 30885 244 0.912281 2.22596564 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 134 2.11e-34   NR XP_002677035.1 5762 g30759 i0 75.9 1.02049180327869 83 18 99.6 1 244 2 260 342 XP_002677035.1 uncharacterized protein NAEGRDRAFT_49265 [Naegleria gruberi] diamond 249 134 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29926874 29926874 PRJNA758770_S_NODE_27611_length_248_cov_0.891429_g27485_i0 PRJNA758770 27611 248 0.891429 2.21074392 Bodo saltans 75058 Euglenozoa other_Eukaryota 140 7.76e-40   NR CUI14431.1 75058 g27485 i0 95.8 1.74193548387097 72 3 87.1 0 216 1 32 103 CUI14431.1 ADP-ribosylation factor, putative [Bodo saltans] diamond 432 140 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;