RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA758398" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA758398 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2015673 2015673 PRJNA758398_S_NODE_22182_length_218_cov_1.319527_g22041_i0 PRJNA758398 22182 218 1.319527 2.87656886 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 1.5399999999999999e-34   NR AAP88974.1 5775 g22041 i0 86.1 0.990825688073395 72 10 99.1 0 218 3 196 267 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 216 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
26989524 26989524 PRJNA758398_S_NODE_21762_length_220_cov_0.894737_g21621_i0 PRJNA758398 21762 220 0.894737 1.9684214 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 114 3.4400000000000003e-29   NR AFX73094.1 1260108 g21621 i0 71.2 0.995454545454545 73 21 99.5 0 220 2 90 162 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 219 114 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta
28852903 28852903 PRJNA758398_S_NODE_34448_length_183_cov_1.082090_g34307_i0 PRJNA758398 34448 183 1.08209 1.9802247 Copromyxa protea 931554 Tubulinea other_Eukaryota 119 4.3699999999999995e-30   NR BAN33737.1 931554 g34307 i0 95 0.983606557377049 60 3 98.4 0 182 3 363 422 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 180 119 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29011374 29011374 PRJNA758398_S_NODE_50748_length_163_cov_0.894737_g50607_i0 PRJNA758398 50748 163 0.894737 1.45842131 Amoeba proteus 5775 Tubulinea other_Eukaryota 76.6 1.23e-14   NR AAD37351.1 5775 g50607 i0 72.5 0.938650306748466 51 14 93.9 0 9 161 123 173 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 153 76.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31759786 31759786 PRJNA758398_S_NODE_42337_length_167_cov_0.864407_g42196_i0 PRJNA758398 42337 167 0.864407 1.44355969 Amoeba proteus 5775 Tubulinea other_Eukaryota 98.2 2.0600000000000001e-22   NR AAD37351.1 5775 g42196 i0 80 0.988023952095808 55 11 98.8 0 165 1 91 145 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 165 98.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;