RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA758398" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA758398 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27053147 27053147 PRJNA758398_S_NODE_43102_length_167_cov_0.864407_g42961_i0 PRJNA758398 43102 167 0.864407 1.44355969 Armatimonadota bacterium 2033014 Bacteria Bacteria 67.8 1.94e-11   NR MBS1716099.1 2033014 g42961 i0 64.2 0.952095808383233 53 19 95.2 0 7 165 442 494 MBS1716099.1 MmgE/PrpD family protein [Armatimonadota bacterium] diamond 159 67.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28158706 28158706 PRJNA758398_S_NODE_14805_length_257_cov_1.716346_g14664_i0 PRJNA758398 14805 257 1.716346 4.41100922 Armatimonadota bacterium 2033014 Bacteria Bacteria 64.3 7.08e-10   NR MEY4882066.1 2033014 g14664 i0 49.1 1.284046692607 55 28 64.2 0 249 85 80 134 MEY4882066.1 hypothetical protein [Armatimonadota bacterium] diamond 330 64.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28979599 28979599 PRJNA758398_S_NODE_42128_length_167_cov_1.016949_g41987_i0 PRJNA758398 42128 167 1.016949 1.69830483 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 44.3 0.00369   NR GIV02590.1 2682145 g41987 i0 40 0.898203592814371 50 30 89.8 0 13 162 37 86 GIV02590.1 MAG: hypothetical protein KatS3mg015_1420 [Fimbriimonadales bacterium] diamond 150 44.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;