RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA758088" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA758088 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13490701 13490701 PRJNA758088_P_NODE_290731_length_250_cov_0.870056_g283760_i0 PRJNA758088 290731 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 142 6.52e-41   NR XP_004334642.1 1257118 g283760 i0 94.5 0.876 73 4 87.6 0 2 220 9 81 XP_004334642.1 Ras family GTPase [Acanthamoeba castellanii str. Neff] diamond 219 142 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28600586 28600586 PRJNA758088_P_NODE_348227_length_243_cov_0.905882_g341256_i0 PRJNA758088 348227 243 0.905882 2.20129326 Vannella simplex 197532 Discosea other_Eukaryota 129 1.3599999999999998e-35   NR AUO29166.1 197532 g341256 i0 98.8 0.987654320987654 80 1 98.8 0 3 242 18 97 AUO29166.1 NADH dehydrogenase subunit 6 [Vannella simplex] diamond 240 129 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
31316930 31316930 PRJNA758088_P_NODE_342615_length_244_cov_0.900585_g335644_i0 PRJNA758088 342615 244 0.900585 2.1974274 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.5 1.2e-4   NR XP_004357155.1 1257118 g335644 i0 43.3 0.737704918032787 60 34 73.8 0 58 237 88 147 XP_004357155.1 ankyrin repeat-containing protein [Acanthamoeba castellanii str. Neff] diamond 180 48.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31959283 31959283 PRJNA758088_P_NODE_269517_length_257_cov_1.255435_g262546_i0 PRJNA758088 269517 257 1.255435 3.22646795 root 1 Root_unresolved Root_unresolved 121 1.85e-32   NR XP_004340539.1 1257118 g262546 i0 70.2 1.96108949416342 84 25 98.1 0 257 6 74 157 XP_004340539.1 Ras GTPase rap1b, putative [Acanthamoeba castellanii str. Neff] diamond 504 121 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32266237 32266237 PRJNA758088_P_NODE_314798_length_247_cov_0.885057_g307827_i0 PRJNA758088 314798 247 0.885057 2.18609079 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.9 8.43e-14   NR XP_004356508.1 1257118 g307827 i0 64.9 4.55465587044534 57 20 69.2 0 172 2 132 188 XP_004356508.1 uncharacterized protein ACA1_171920 [Acanthamoeba castellanii str. Neff] diamond 1125 75.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;